(16 nodes) pICln-Sm protein complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003457	Small nuclear ribonucleoprotein Sm D3. (147 aa)
	LOC107600046-2	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	ENSSGRP00000092193	Chloride channel, nucleotide-sensitive, 1A. (249 aa)
	LOC107557830	Small nuclear ribonucleoprotein Sm D2-like. (116 aa)
	LOC107600046	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	LOC107580725-2	Small nuclear ribonucleoprotein E. (92 aa)
	ENSSGRP00000076381	Small nuclear ribonucleoprotein F-like isoform X1. (87 aa)
	ENSSGRP00000075801	annotation not available (52 aa)
	ENSSGRP00000065426	Chloride channel, nucleotide-sensitive, 1A. (221 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2 isoform X1. (118 aa)
	LOC107580725	Small nuclear ribonucleoprotein E isoform X1. (92 aa)
	LOC107548810	Small nuclear ribonucleoprotein F. (86 aa)
	LOC107557460	Small nuclear ribonucleoprotein Sm D1. (112 aa)
	LOC107600898	Small nuclear ribonucleoprotein Sm D3-like. (128 aa)
	LOC107559756	Small nuclear ribonucleoprotein Sm D1-like. (120 aa)
	ENSSGRP00000009484	annotation not available (117 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003457	ENSSGRP00000009484	ENSSGRP00000003457	ENSSGRP00000009484	Small nuclear ribonucleoprotein Sm D3.	annotation not available	0.887
ENSSGRP00000003457	ENSSGRP00000065426	ENSSGRP00000003457	ENSSGRP00000065426	Small nuclear ribonucleoprotein Sm D3.	Chloride channel, nucleotide-sensitive, 1A.	0.887
ENSSGRP00000003457	ENSSGRP00000075801	ENSSGRP00000003457	ENSSGRP00000075801	Small nuclear ribonucleoprotein Sm D3.	annotation not available	0.989
ENSSGRP00000003457	ENSSGRP00000076381	ENSSGRP00000003457	ENSSGRP00000076381	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein F-like isoform X1.	0.993
ENSSGRP00000003457	ENSSGRP00000092193	ENSSGRP00000003457	ENSSGRP00000092193	Small nuclear ribonucleoprotein Sm D3.	Chloride channel, nucleotide-sensitive, 1A.	0.887
ENSSGRP00000003457	LOC107548810	ENSSGRP00000003457	ENSSGRP00000102199	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein F.	0.993
ENSSGRP00000003457	LOC107557460	ENSSGRP00000003457	ENSSGRP00000108761	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1.	0.995
ENSSGRP00000003457	LOC107557830	ENSSGRP00000003457	ENSSGRP00000087163	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2-like.	0.996
ENSSGRP00000003457	LOC107559756	ENSSGRP00000003457	ENSSGRP00000017931	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1-like.	0.995
ENSSGRP00000003457	LOC107580725	ENSSGRP00000003457	ENSSGRP00000024863	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E isoform X1.	0.989
ENSSGRP00000003457	LOC107580725-2	ENSSGRP00000003457	ENSSGRP00000078257	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E.	0.989
ENSSGRP00000003457	snrpd2	ENSSGRP00000003457	ENSSGRP00000062224	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2 isoform X1.	0.996
ENSSGRP00000009484	ENSSGRP00000003457	ENSSGRP00000009484	ENSSGRP00000003457	annotation not available	Small nuclear ribonucleoprotein Sm D3.	0.887
ENSSGRP00000009484	ENSSGRP00000075801	ENSSGRP00000009484	ENSSGRP00000075801	annotation not available	annotation not available	0.856
ENSSGRP00000009484	ENSSGRP00000076381	ENSSGRP00000009484	ENSSGRP00000076381	annotation not available	Small nuclear ribonucleoprotein F-like isoform X1.	0.874
ENSSGRP00000009484	LOC107548810	ENSSGRP00000009484	ENSSGRP00000102199	annotation not available	Small nuclear ribonucleoprotein F.	0.874
ENSSGRP00000009484	LOC107557460	ENSSGRP00000009484	ENSSGRP00000108761	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.971
ENSSGRP00000009484	LOC107557830	ENSSGRP00000009484	ENSSGRP00000087163	annotation not available	Small nuclear ribonucleoprotein Sm D2-like.	0.928
ENSSGRP00000009484	LOC107559756	ENSSGRP00000009484	ENSSGRP00000017931	annotation not available	Small nuclear ribonucleoprotein Sm D1-like.	0.971
ENSSGRP00000009484	LOC107580725	ENSSGRP00000009484	ENSSGRP00000024863	annotation not available	Small nuclear ribonucleoprotein E isoform X1.	0.856