(9 nodes) FACT complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000097788	Tonsoku-like, DNA repair protein. (1221 aa)
	ENSSGRP00000103247	Structure specific recognition protein 1a. (586 aa)
	ENSSGRP00000075460	annotation not available (183 aa)
	ENSSGRP00000009522	annotation not available (64 aa)
	ENSSGRP00000020706	annotation not available (45 aa)
	LOC107574555	FACT complex subunit SPT16-like. (816 aa)
	LOC107589602	NF-kappa-B inhibitor-like protein 2. (1378 aa)
	ssrp1	Structure-specific recognition protein 1. (728 aa)
	LOC107554702	Structure-specific recognition protein 1. (544 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	annotation not available	annotation not available	0.970
ENSSGRP00000009522	ENSSGRP00000097788	ENSSGRP00000009522	ENSSGRP00000097788	annotation not available	Tonsoku-like, DNA repair protein.	0.565
ENSSGRP00000009522	LOC107574555	ENSSGRP00000009522	ENSSGRP00000021065	annotation not available	FACT complex subunit SPT16-like.	0.990
ENSSGRP00000009522	LOC107589602	ENSSGRP00000009522	ENSSGRP00000057801	annotation not available	NF-kappa-B inhibitor-like protein 2.	0.565
ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	annotation not available	annotation not available	0.970
ENSSGRP00000020706	ENSSGRP00000075460	ENSSGRP00000020706	ENSSGRP00000075460	annotation not available	annotation not available	0.970
ENSSGRP00000020706	ENSSGRP00000103247	ENSSGRP00000020706	ENSSGRP00000103247	annotation not available	Structure specific recognition protein 1a.	0.970
ENSSGRP00000020706	LOC107554702	ENSSGRP00000020706	ENSSGRP00000087235	annotation not available	Structure-specific recognition protein 1.	0.970
ENSSGRP00000020706	ssrp1	ENSSGRP00000020706	ENSSGRP00000074633	annotation not available	Structure-specific recognition protein 1.	0.970
ENSSGRP00000075460	ENSSGRP00000020706	ENSSGRP00000075460	ENSSGRP00000020706	annotation not available	annotation not available	0.970
ENSSGRP00000075460	ENSSGRP00000097788	ENSSGRP00000075460	ENSSGRP00000097788	annotation not available	Tonsoku-like, DNA repair protein.	0.565
ENSSGRP00000075460	LOC107574555	ENSSGRP00000075460	ENSSGRP00000021065	annotation not available	FACT complex subunit SPT16-like.	0.990
ENSSGRP00000075460	LOC107589602	ENSSGRP00000075460	ENSSGRP00000057801	annotation not available	NF-kappa-B inhibitor-like protein 2.	0.565
ENSSGRP00000097788	ENSSGRP00000009522	ENSSGRP00000097788	ENSSGRP00000009522	Tonsoku-like, DNA repair protein.	annotation not available	0.565
ENSSGRP00000097788	ENSSGRP00000075460	ENSSGRP00000097788	ENSSGRP00000075460	Tonsoku-like, DNA repair protein.	annotation not available	0.565
ENSSGRP00000097788	ENSSGRP00000103247	ENSSGRP00000097788	ENSSGRP00000103247	Tonsoku-like, DNA repair protein.	Structure specific recognition protein 1a.	0.565
ENSSGRP00000097788	LOC107554702	ENSSGRP00000097788	ENSSGRP00000087235	Tonsoku-like, DNA repair protein.	Structure-specific recognition protein 1.	0.565
ENSSGRP00000097788	LOC107574555	ENSSGRP00000097788	ENSSGRP00000021065	Tonsoku-like, DNA repair protein.	FACT complex subunit SPT16-like.	0.440
ENSSGRP00000097788	ssrp1	ENSSGRP00000097788	ENSSGRP00000074633	Tonsoku-like, DNA repair protein.	Structure-specific recognition protein 1.	0.565
ENSSGRP00000103247	ENSSGRP00000020706	ENSSGRP00000103247	ENSSGRP00000020706	Structure specific recognition protein 1a.	annotation not available	0.970