(18 nodes) Exon-exon junction complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000100580	R3H and coiled-coil domain-containing protein 1-like. (323 aa)
	ENSSGRP00000099627	annotation not available (1168 aa)
	ENSSGRP00000099256	Protein CASC3-like. (752 aa)
	LOC107592456	RNA-binding protein 8A-like. (174 aa)
	ENSSGRP00000047160	Telomerase-binding protein EST1A-like. (1548 aa)
	ENSSGRP00000048555	Coiled-coil domain-containing protein R3HCC1L-like isoform X1. (139 aa)
	ENSSGRP00000094875	Coiled-coil domain-containing protein R3HCC1L-like. (154 aa)
	LOC107585049	Protein CASC3. (758 aa)
	LOC107589291	Telomerase-binding protein EST1A-like. (1571 aa)
	UPF2	UPF2 regulator of nonsense mediated mRNA decay. (1192 aa)
	ENSSGRP00000076060	Coiled-coil domain containing 9. (667 aa)
	LOC107592145	RNA-binding protein 8A. (174 aa)
	LOC107549138	Protein mago nashi homolog. (147 aa)
	ENSSGRP00000033138	Partner of Y14 and mago B-like. (180 aa)
	LOC107572958	Partner of Y14 and mago-like. (197 aa)
	ENSSGRP00000010817	Coiled-coil domain containing 9. (337 aa)
	LOC107585897	Protein mago nashi homolog. (147 aa)
	ENSSGRP00000010815	Coiled-coil domain-containing protein 9-like. (481 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000033138	ENSSGRP00000099627	ENSSGRP00000033138	ENSSGRP00000099627	Partner of Y14 and mago B-like.	annotation not available	0.519
ENSSGRP00000033138	LOC107549138	ENSSGRP00000033138	ENSSGRP00000032112	Partner of Y14 and mago B-like.	Protein mago nashi homolog.	0.985
ENSSGRP00000033138	LOC107572958	ENSSGRP00000033138	ENSSGRP00000041485	Partner of Y14 and mago B-like.	Partner of Y14 and mago-like.	0.901
ENSSGRP00000033138	LOC107585897	ENSSGRP00000033138	ENSSGRP00000027939	Partner of Y14 and mago B-like.	Protein mago nashi homolog.	0.985
ENSSGRP00000033138	LOC107592145	ENSSGRP00000033138	ENSSGRP00000002649	Partner of Y14 and mago B-like.	RNA-binding protein 8A.	0.998
ENSSGRP00000033138	LOC107592456	ENSSGRP00000033138	ENSSGRP00000096565	Partner of Y14 and mago B-like.	RNA-binding protein 8A-like.	0.998
ENSSGRP00000033138	UPF2	ENSSGRP00000033138	ENSSGRP00000080838	Partner of Y14 and mago B-like.	UPF2 regulator of nonsense mediated mRNA decay.	0.519
ENSSGRP00000047160	ENSSGRP00000099256	ENSSGRP00000047160	ENSSGRP00000099256	Telomerase-binding protein EST1A-like.	Protein CASC3-like.	0.803
ENSSGRP00000047160	ENSSGRP00000099627	ENSSGRP00000047160	ENSSGRP00000099627	Telomerase-binding protein EST1A-like.	annotation not available	0.802
ENSSGRP00000047160	LOC107549138	ENSSGRP00000047160	ENSSGRP00000032112	Telomerase-binding protein EST1A-like.	Protein mago nashi homolog.	0.781
ENSSGRP00000047160	LOC107585049	ENSSGRP00000047160	ENSSGRP00000094792	Telomerase-binding protein EST1A-like.	Protein CASC3.	0.764
ENSSGRP00000047160	LOC107585897	ENSSGRP00000047160	ENSSGRP00000027939	Telomerase-binding protein EST1A-like.	Protein mago nashi homolog.	0.781
ENSSGRP00000047160	LOC107589291	ENSSGRP00000047160	ENSSGRP00000063934	Telomerase-binding protein EST1A-like.	Telomerase-binding protein EST1A-like.	0.900
ENSSGRP00000047160	LOC107592145	ENSSGRP00000047160	ENSSGRP00000002649	Telomerase-binding protein EST1A-like.	RNA-binding protein 8A.	0.884
ENSSGRP00000047160	LOC107592456	ENSSGRP00000047160	ENSSGRP00000096565	Telomerase-binding protein EST1A-like.	RNA-binding protein 8A-like.	0.884
ENSSGRP00000047160	UPF2	ENSSGRP00000047160	ENSSGRP00000080838	Telomerase-binding protein EST1A-like.	UPF2 regulator of nonsense mediated mRNA decay.	0.802
ENSSGRP00000099256	ENSSGRP00000047160	ENSSGRP00000099256	ENSSGRP00000047160	Protein CASC3-like.	Telomerase-binding protein EST1A-like.	0.803
ENSSGRP00000099256	ENSSGRP00000099627	ENSSGRP00000099256	ENSSGRP00000099627	Protein CASC3-like.	annotation not available	0.914
ENSSGRP00000099256	LOC107549138	ENSSGRP00000099256	ENSSGRP00000032112	Protein CASC3-like.	Protein mago nashi homolog.	0.984
ENSSGRP00000099256	LOC107585049	ENSSGRP00000099256	ENSSGRP00000094792	Protein CASC3-like.	Protein CASC3.	0.900