(10 nodes) siRNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107561017	RISC-loading complex subunit tarbp2-like isoform X1. (346 aa)
	ENSSGRP00000010987	FMRP translational regulator 1. (568 aa)
	LOC107560808	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1. (280 aa)
	LOC107552216	Methyl-CpG-binding protein 2-like. (541 aa)
	ENSSGRP00000043434	FMRP translational regulator 1. (595 aa)
	LOC107584876	Methyl-CpG-binding protein 2-like isoform X1. (540 aa)
	ENSSGRP00000066927	annotation not available (146 aa)
	ENSSGRP00000066928	annotation not available (84 aa)
	LOC107549310	RISC-loading complex subunit TARBP2. (346 aa)
	LOC107561731	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (289 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010987	LOC107552216	ENSSGRP00000010987	ENSSGRP00000036940	FMRP translational regulator 1.	Methyl-CpG-binding protein 2-like.	0.630
ENSSGRP00000010987	LOC107584876	ENSSGRP00000010987	ENSSGRP00000064983	FMRP translational regulator 1.	Methyl-CpG-binding protein 2-like isoform X1.	0.630
ENSSGRP00000043434	LOC107552216	ENSSGRP00000043434	ENSSGRP00000036940	FMRP translational regulator 1.	Methyl-CpG-binding protein 2-like.	0.630
ENSSGRP00000043434	LOC107584876	ENSSGRP00000043434	ENSSGRP00000064983	FMRP translational regulator 1.	Methyl-CpG-binding protein 2-like isoform X1.	0.630
ENSSGRP00000066927	LOC107549310	ENSSGRP00000066927	ENSSGRP00000085551	annotation not available	RISC-loading complex subunit TARBP2.	0.406
ENSSGRP00000066927	LOC107560808	ENSSGRP00000066927	ENSSGRP00000034814	annotation not available	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	0.406
ENSSGRP00000066927	LOC107561017	ENSSGRP00000066927	ENSSGRP00000076716	annotation not available	RISC-loading complex subunit tarbp2-like isoform X1.	0.406
ENSSGRP00000066927	LOC107561731	ENSSGRP00000066927	ENSSGRP00000087295	annotation not available	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.406
ENSSGRP00000066928	LOC107549310	ENSSGRP00000066928	ENSSGRP00000085551	annotation not available	RISC-loading complex subunit TARBP2.	0.406
ENSSGRP00000066928	LOC107560808	ENSSGRP00000066928	ENSSGRP00000034814	annotation not available	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	0.406
ENSSGRP00000066928	LOC107561017	ENSSGRP00000066928	ENSSGRP00000076716	annotation not available	RISC-loading complex subunit tarbp2-like isoform X1.	0.406
ENSSGRP00000066928	LOC107561731	ENSSGRP00000066928	ENSSGRP00000087295	annotation not available	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.406
LOC107549310	ENSSGRP00000066927	ENSSGRP00000085551	ENSSGRP00000066927	RISC-loading complex subunit TARBP2.	annotation not available	0.406
LOC107549310	ENSSGRP00000066928	ENSSGRP00000085551	ENSSGRP00000066928	RISC-loading complex subunit TARBP2.	annotation not available	0.406
LOC107552216	ENSSGRP00000010987	ENSSGRP00000036940	ENSSGRP00000010987	Methyl-CpG-binding protein 2-like.	FMRP translational regulator 1.	0.630
LOC107552216	ENSSGRP00000043434	ENSSGRP00000036940	ENSSGRP00000043434	Methyl-CpG-binding protein 2-like.	FMRP translational regulator 1.	0.630
LOC107560808	ENSSGRP00000066927	ENSSGRP00000034814	ENSSGRP00000066927	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	annotation not available	0.406
LOC107560808	ENSSGRP00000066928	ENSSGRP00000034814	ENSSGRP00000066928	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	annotation not available	0.406
LOC107561017	ENSSGRP00000066927	ENSSGRP00000076716	ENSSGRP00000066927	RISC-loading complex subunit tarbp2-like isoform X1.	annotation not available	0.406
LOC107561017	ENSSGRP00000066928	ENSSGRP00000076716	ENSSGRP00000066928	RISC-loading complex subunit tarbp2-like isoform X1.	annotation not available	0.406