(14 nodes) SNARE complex assembly network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vamp4	Vesicle-associated membrane protein 4 isoform X1. (168 aa)
	LOC107587315	Vesicle-associated membrane protein 8-like. (124 aa)
	ENSSGRP00000002909	Vesicle-associated membrane protein 2-like. (114 aa)
	LOC107554313	Vesicle-associated membrane protein 2-like. (110 aa)
	LOC107594988	Vesicle-associated membrane protein 8-like. (121 aa)
	ENSSGRP00000028109	UV radiation resistance-associated gene protein-like isoform X1. (994 aa)
	LOC107565219	Syntaxin-binding protein 6-like. (210 aa)
	ENSSGRP00000055286	UV radiation resistance-associated gene protein-like. (676 aa)
	ENSSGRP00000063700	Vesicle-associated membrane protein 2-like. (116 aa)
	ENSSGRP00000066179	Vesicle-associated membrane protein 1-like. (118 aa)
	VAMP4	Vesicle associated membrane protein 4. (136 aa)
	LOC107589763	Syntaxin-binding protein 6-like. (210 aa)
	ENSSGRP00000096372	Vesicle-associated membrane protein 2. (108 aa)
	ENSSGRP00000109869	Vesicle-associated membrane protein 2-like isoform X1. (136 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002909	LOC107587315	ENSSGRP00000002909	ENSSGRP00000001738	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000002909	LOC107594988	ENSSGRP00000002909	ENSSGRP00000016230	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000002909	VAMP4	ENSSGRP00000002909	ENSSGRP00000069295	Vesicle-associated membrane protein 2-like.	Vesicle associated membrane protein 4.	0.754
ENSSGRP00000002909	vamp4	ENSSGRP00000002909	ENSSGRP00000006324	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 4 isoform X1.	0.754
ENSSGRP00000028109	ENSSGRP00000055286	ENSSGRP00000028109	ENSSGRP00000055286	UV radiation resistance-associated gene protein-like isoform X1.	UV radiation resistance-associated gene protein-like.	0.900
ENSSGRP00000055286	ENSSGRP00000028109	ENSSGRP00000055286	ENSSGRP00000028109	UV radiation resistance-associated gene protein-like.	UV radiation resistance-associated gene protein-like isoform X1.	0.900
ENSSGRP00000063700	LOC107587315	ENSSGRP00000063700	ENSSGRP00000001738	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000063700	LOC107594988	ENSSGRP00000063700	ENSSGRP00000016230	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000063700	VAMP4	ENSSGRP00000063700	ENSSGRP00000069295	Vesicle-associated membrane protein 2-like.	Vesicle associated membrane protein 4.	0.754
ENSSGRP00000063700	vamp4	ENSSGRP00000063700	ENSSGRP00000006324	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 4 isoform X1.	0.754
ENSSGRP00000066179	LOC107587315	ENSSGRP00000066179	ENSSGRP00000001738	Vesicle-associated membrane protein 1-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000066179	LOC107594988	ENSSGRP00000066179	ENSSGRP00000016230	Vesicle-associated membrane protein 1-like.	Vesicle-associated membrane protein 8-like.	0.507
ENSSGRP00000066179	VAMP4	ENSSGRP00000066179	ENSSGRP00000069295	Vesicle-associated membrane protein 1-like.	Vesicle associated membrane protein 4.	0.754
ENSSGRP00000066179	vamp4	ENSSGRP00000066179	ENSSGRP00000006324	Vesicle-associated membrane protein 1-like.	Vesicle-associated membrane protein 4 isoform X1.	0.754
ENSSGRP00000096372	LOC107587315	ENSSGRP00000096372	ENSSGRP00000001738	Vesicle-associated membrane protein 2.	Vesicle-associated membrane protein 8-like.	0.519
ENSSGRP00000096372	LOC107594988	ENSSGRP00000096372	ENSSGRP00000016230	Vesicle-associated membrane protein 2.	Vesicle-associated membrane protein 8-like.	0.519
ENSSGRP00000096372	VAMP4	ENSSGRP00000096372	ENSSGRP00000069295	Vesicle-associated membrane protein 2.	Vesicle associated membrane protein 4.	0.754
ENSSGRP00000096372	vamp4	ENSSGRP00000096372	ENSSGRP00000006324	Vesicle-associated membrane protein 2.	Vesicle-associated membrane protein 4 isoform X1.	0.754
ENSSGRP00000109869	LOC107587315	ENSSGRP00000109869	ENSSGRP00000001738	Vesicle-associated membrane protein 2-like isoform X1.	Vesicle-associated membrane protein 8-like.	0.524
ENSSGRP00000109869	LOC107594988	ENSSGRP00000109869	ENSSGRP00000016230	Vesicle-associated membrane protein 2-like isoform X1.	Vesicle-associated membrane protein 8-like.	0.524