(25 nodes) RNA stem-loop binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107597149	La-related protein 6-like. (477 aa)
	ENSSGRP00000020782	DAZ associated protein 1. (234 aa)
	LOC107560775	RING finger and CCCH-type zinc finger domain-containing protein. (1096 aa)
	ENSSGRP00000016161	Thioredoxin domain containing 11. (801 aa)
	LOC107556218	AT-rich interactive domain-containing protein 5A-like. (597 aa)
	LOC107551774	Ribonuclease ZC3H12A-like. (643 aa)
	ENSSGRP00000042990	Zinc finger CCCH-type containing 12A. (167 aa)
	ENSSGRP00000043434	FMRP translational regulator 1. (595 aa)
	ENSSGRP00000066927	annotation not available (146 aa)
	ENSSGRP00000066928	annotation not available (84 aa)
	LOC107588069	RING finger and CCCH-type zinc finger domain-containing protein. (1090 aa)
	LOC107553518	DAZ-associated protein 1-like. (439 aa)
	ENSSGRP00000086341	La ribonucleoprotein 6, translational regulator b. (420 aa)
	LOC107569008	Bifunctional glutamate/proline--tRNA ligase-like. (1172 aa)
	ENSSGRP00000014694	Roquin-2-like. (951 aa)
	ENSSGRP00000011614	Ribonuclease ZC3H12A-like. (567 aa)
	ENSSGRP00000010987	FMRP translational regulator 1. (568 aa)
	zc3h12a	Bifunctional endoribonuclease and deubiquitinase ZC3H12A. (643 aa)
	ENSSGRP00000002744	Ring finger and CCCH-type domains 1a. (983 aa)
	ENSSGRP00000108769	Bifunctional glutamate/proline--tRNA ligase-like isoform X1. (1679 aa)
	ENSSGRP00000104707	Methyltransferase like 16. (453 aa)
	LOC107595350	La-related protein 6-like. (600 aa)
	ENSSGRP00000002444	RING finger and CCCH-type zinc finger domain-containing protein. (975 aa)
	ENSSGRP00000018401	La-related protein 6-like. (463 aa)
	LOC107595546	RING finger and CCCH-type zinc finger domain-containing protein. (1041 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002444	ENSSGRP00000014694	ENSSGRP00000002444	ENSSGRP00000014694	RING finger and CCCH-type zinc finger domain-containing protein.	Roquin-2-like.	0.591
ENSSGRP00000002444	LOC107595546	ENSSGRP00000002444	ENSSGRP00000018764	RING finger and CCCH-type zinc finger domain-containing protein.	RING finger and CCCH-type zinc finger domain-containing protein.	0.589
ENSSGRP00000002744	ENSSGRP00000011614	ENSSGRP00000002744	ENSSGRP00000011614	Ring finger and CCCH-type domains 1a.	Ribonuclease ZC3H12A-like.	0.585
ENSSGRP00000002744	ENSSGRP00000014694	ENSSGRP00000002744	ENSSGRP00000014694	Ring finger and CCCH-type domains 1a.	Roquin-2-like.	0.604
ENSSGRP00000002744	ENSSGRP00000042990	ENSSGRP00000002744	ENSSGRP00000042990	Ring finger and CCCH-type domains 1a.	Zinc finger CCCH-type containing 12A.	0.585
ENSSGRP00000002744	LOC107595546	ENSSGRP00000002744	ENSSGRP00000018764	Ring finger and CCCH-type domains 1a.	RING finger and CCCH-type zinc finger domain-containing protein.	0.598
ENSSGRP00000011614	ENSSGRP00000002744	ENSSGRP00000011614	ENSSGRP00000002744	Ribonuclease ZC3H12A-like.	Ring finger and CCCH-type domains 1a.	0.585
ENSSGRP00000011614	LOC107588069	ENSSGRP00000011614	ENSSGRP00000074427	Ribonuclease ZC3H12A-like.	RING finger and CCCH-type zinc finger domain-containing protein.	0.585
ENSSGRP00000014694	ENSSGRP00000002444	ENSSGRP00000014694	ENSSGRP00000002444	Roquin-2-like.	RING finger and CCCH-type zinc finger domain-containing protein.	0.591
ENSSGRP00000014694	ENSSGRP00000002744	ENSSGRP00000014694	ENSSGRP00000002744	Roquin-2-like.	Ring finger and CCCH-type domains 1a.	0.604
ENSSGRP00000014694	LOC107556218	ENSSGRP00000014694	ENSSGRP00000089128	Roquin-2-like.	AT-rich interactive domain-containing protein 5A-like.	0.534
ENSSGRP00000014694	LOC107560775	ENSSGRP00000014694	ENSSGRP00000031061	Roquin-2-like.	RING finger and CCCH-type zinc finger domain-containing protein.	0.587
ENSSGRP00000014694	LOC107588069	ENSSGRP00000014694	ENSSGRP00000074427	Roquin-2-like.	RING finger and CCCH-type zinc finger domain-containing protein.	0.590
ENSSGRP00000042990	ENSSGRP00000002744	ENSSGRP00000042990	ENSSGRP00000002744	Zinc finger CCCH-type containing 12A.	Ring finger and CCCH-type domains 1a.	0.585
ENSSGRP00000042990	LOC107588069	ENSSGRP00000042990	ENSSGRP00000074427	Zinc finger CCCH-type containing 12A.	RING finger and CCCH-type zinc finger domain-containing protein.	0.585
ENSSGRP00000108769	LOC107569008	ENSSGRP00000108769	ENSSGRP00000017734	Bifunctional glutamate/proline--tRNA ligase-like isoform X1.	Bifunctional glutamate/proline--tRNA ligase-like.	0.999
LOC107556218	ENSSGRP00000014694	ENSSGRP00000089128	ENSSGRP00000014694	AT-rich interactive domain-containing protein 5A-like.	Roquin-2-like.	0.534
LOC107556218	LOC107595546	ENSSGRP00000089128	ENSSGRP00000018764	AT-rich interactive domain-containing protein 5A-like.	RING finger and CCCH-type zinc finger domain-containing protein.	0.534
LOC107560775	ENSSGRP00000014694	ENSSGRP00000031061	ENSSGRP00000014694	RING finger and CCCH-type zinc finger domain-containing protein.	Roquin-2-like.	0.587
LOC107560775	LOC107595546	ENSSGRP00000031061	ENSSGRP00000018764	RING finger and CCCH-type zinc finger domain-containing protein.	RING finger and CCCH-type zinc finger domain-containing protein.	0.587