(33 nodes) Endodermal cell differentiation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107584709	Matrix metalloproteinase-15 (membrane-inserted). (658 aa)
	LOC107556410	Nuclear receptor subfamily 0 group B member 1-like isoform X1. (264 aa)
	ENSSGRP00000026187	annotation not available (62 aa)
	SETD2	Histone-lysine N-methyltransferase SETD2-like. (2565 aa)
	ENSSGRP00000025383	Fibronectin-like. (2463 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	Lamb3	Laminin subunit beta-3 isoform X1. (746 aa)
	LOC107557973	Matrix metalloproteinase-14 (membrane-inserted). (657 aa)
	LOC107595559	Apelin receptor B. (327 aa)
	ENSSGRP00000012017	Fibronectin-like. (2208 aa)
	ENSSGRP00000010025	[histone H3]-dimethyl-L-lysine36 N-methyltransferase. (2629 aa)
	ENSSGRP00000000830	High mobility group AT-hook 2. (84 aa)
	ENSSGRP00000112932	Apelin receptor A. (375 aa)
	LOC107582025	Nuclear receptor subfamily 0 group B member 1-like. (264 aa)
	ENSSGRP00000108900	Vitronectin-like. (343 aa)
	LOC107593758	Parafibromin. (530 aa)
	ENSSGRP00000101015	Fibronectin-like. (2387 aa)
	ENSSGRP00000097406	Apelin receptor early endogenous ligand. (53 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	LOC107556289	Fibronectin-like isoform X1. (2495 aa)
	ENSSGRP00000091382	Vitronectin-like. (443 aa)
	ENSSGRP00000086417	annotation not available (99 aa)
	LOC107591383	Matrix metalloproteinase-14 (membrane-inserted). (611 aa)
	ENSSGRP00000084113	annotation not available (606 aa)
	LOC107548575	Vitronectin-like isoform X1. (512 aa)
	LOC107603100	Homeobox protein Mix.2-like. (326 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (716 aa)
	ENSSGRP00000062886	Vitronectin-like. (393 aa)
	ENSSGRP00000059028	Homeobox protein Mix.1-like. (318 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	ENSSGRP00000052546	Apelin receptor B-like. (351 aa)
	ENSSGRP00000038859	Apelin receptor A-like. (375 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010025	ENSSGRP00000025310	ENSSGRP00000010025	ENSSGRP00000025310	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	RNA polymerase-associated protein CTR9 homolog.	0.755
ENSSGRP00000010025	ENSSGRP00000096558	ENSSGRP00000010025	ENSSGRP00000096558	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	Parafibromin-like.	0.660
ENSSGRP00000010025	LOC107553014	ENSSGRP00000010025	ENSSGRP00000055838	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	RNA polymerase-associated protein CTR9 homolog.	0.755
ENSSGRP00000010025	LOC107588567	ENSSGRP00000010025	ENSSGRP00000057106	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	RNA polymerase-associated protein RTF1 homolog.	0.739
ENSSGRP00000010025	LOC107593758	ENSSGRP00000010025	ENSSGRP00000107347	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	Parafibromin.	0.660
ENSSGRP00000010025	rtf1	ENSSGRP00000010025	ENSSGRP00000072037	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.739
ENSSGRP00000012017	ENSSGRP00000062886	ENSSGRP00000012017	ENSSGRP00000062886	Fibronectin-like.	Vitronectin-like.	0.421
ENSSGRP00000012017	ENSSGRP00000091382	ENSSGRP00000012017	ENSSGRP00000091382	Fibronectin-like.	Vitronectin-like.	0.421
ENSSGRP00000012017	ENSSGRP00000108900	ENSSGRP00000012017	ENSSGRP00000108900	Fibronectin-like.	Vitronectin-like.	0.421
ENSSGRP00000012017	LOC107548575	ENSSGRP00000012017	ENSSGRP00000079735	Fibronectin-like.	Vitronectin-like isoform X1.	0.421
ENSSGRP00000025310	ENSSGRP00000010025	ENSSGRP00000025310	ENSSGRP00000010025	RNA polymerase-associated protein CTR9 homolog.	[histone H3]-dimethyl-L-lysine36 N-methyltransferase.	0.755
ENSSGRP00000025310	ENSSGRP00000096558	ENSSGRP00000025310	ENSSGRP00000096558	RNA polymerase-associated protein CTR9 homolog.	Parafibromin-like.	0.996
ENSSGRP00000025310	LOC107588567	ENSSGRP00000025310	ENSSGRP00000057106	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog.	0.994
ENSSGRP00000025310	LOC107593758	ENSSGRP00000025310	ENSSGRP00000107347	RNA polymerase-associated protein CTR9 homolog.	Parafibromin.	0.996
ENSSGRP00000025310	SETD2	ENSSGRP00000025310	ENSSGRP00000025666	RNA polymerase-associated protein CTR9 homolog.	Histone-lysine N-methyltransferase SETD2-like.	0.755
ENSSGRP00000025310	rtf1	ENSSGRP00000025310	ENSSGRP00000072037	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.994
ENSSGRP00000025383	ENSSGRP00000062886	ENSSGRP00000025383	ENSSGRP00000062886	Fibronectin-like.	Vitronectin-like.	0.421
ENSSGRP00000025383	ENSSGRP00000091382	ENSSGRP00000025383	ENSSGRP00000091382	Fibronectin-like.	Vitronectin-like.	0.421
ENSSGRP00000025383	ENSSGRP00000101015	ENSSGRP00000025383	ENSSGRP00000101015	Fibronectin-like.	Fibronectin-like.	0.901
ENSSGRP00000025383	ENSSGRP00000108900	ENSSGRP00000025383	ENSSGRP00000108900	Fibronectin-like.	Vitronectin-like.	0.421