(23 nodes) Protein localization to endosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107567956	Ras-related protein Rab-35. (199 aa)
	ENSSGRP00000034600	MICAL-like protein 1. (791 aa)
	ENSSGRP00000035467	annotation not available (139 aa)
	ENSSGRP00000048468	ADP-ribosylation factor 6b. (111 aa)
	LOC107588586	Heat shock cognate 71 kDa protein. (668 aa)
	ENSSGRP00000062023	Ras-related protein Rab-35-like. (199 aa)
	LOC107554119	Ras-related protein Rab-35-like. (209 aa)
	lrrc1	Leucine-rich repeat-containing protein 1. (528 aa)
	ENSSGRP00000094528	Scribble planar cell polarity protein. (1755 aa)
	LOC107582509	WASH complex subunit FAM21-like isoform X1. (1368 aa)
	LOC107591026	Vacuolar protein sorting-associated protein 35. (798 aa)
	ENSSGRP00000111691	Ras-related protein Rab-35-like. (194 aa)
	LOC107574486	ADP-ribosylation factor 6-like. (175 aa)
	ENSSGRP00000003802	Scribble planar cell polarity protein. (1807 aa)
	LOC107549913	A-kinase anchor protein 11-like isoform X1. (1816 aa)
	LOC107598694	Vacuolar protein sorting-associated protein 35-like. (796 aa)
	ENSSGRP00000010201	annotation not available (120 aa)
	ENSSGRP00000019467	WASH complex subunit 2C. (1154 aa)
	ENSSGRP00000020149	A-kinase anchor protein 11-like. (1760 aa)
	LOC107552184	Ras-related protein Rab-35-like isoform X1. (201 aa)
	ENSSGRP00000026567	Heat shock cognate 71 kDa protein-like. (600 aa)
	LOC107577128	Heat shock cognate 71 kDa protein-like. (132 aa)
	LOC107597704	Leucine-rich repeat-containing protein 1-like. (526 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010201	ENSSGRP00000035467	ENSSGRP00000010201	ENSSGRP00000035467	annotation not available	annotation not available	0.424
ENSSGRP00000010201	ENSSGRP00000062023	ENSSGRP00000010201	ENSSGRP00000062023	annotation not available	Ras-related protein Rab-35-like.	0.424
ENSSGRP00000010201	ENSSGRP00000111691	ENSSGRP00000010201	ENSSGRP00000111691	annotation not available	Ras-related protein Rab-35-like.	0.424
ENSSGRP00000010201	LOC107552184	ENSSGRP00000010201	ENSSGRP00000021531	annotation not available	Ras-related protein Rab-35-like isoform X1.	0.424
ENSSGRP00000010201	LOC107554119	ENSSGRP00000010201	ENSSGRP00000081712	annotation not available	Ras-related protein Rab-35-like.	0.424
ENSSGRP00000010201	LOC107567956	ENSSGRP00000010201	ENSSGRP00000030222	annotation not available	Ras-related protein Rab-35.	0.424
ENSSGRP00000019467	LOC107591026	ENSSGRP00000019467	ENSSGRP00000096367	WASH complex subunit 2C.	Vacuolar protein sorting-associated protein 35.	0.788
ENSSGRP00000019467	LOC107598694	ENSSGRP00000019467	ENSSGRP00000001133	WASH complex subunit 2C.	Vacuolar protein sorting-associated protein 35-like.	0.788
ENSSGRP00000034600	ENSSGRP00000035467	ENSSGRP00000034600	ENSSGRP00000035467	MICAL-like protein 1.	annotation not available	0.420
ENSSGRP00000034600	ENSSGRP00000062023	ENSSGRP00000034600	ENSSGRP00000062023	MICAL-like protein 1.	Ras-related protein Rab-35-like.	0.420
ENSSGRP00000034600	ENSSGRP00000111691	ENSSGRP00000034600	ENSSGRP00000111691	MICAL-like protein 1.	Ras-related protein Rab-35-like.	0.420
ENSSGRP00000034600	LOC107552184	ENSSGRP00000034600	ENSSGRP00000021531	MICAL-like protein 1.	Ras-related protein Rab-35-like isoform X1.	0.420
ENSSGRP00000034600	LOC107554119	ENSSGRP00000034600	ENSSGRP00000081712	MICAL-like protein 1.	Ras-related protein Rab-35-like.	0.420
ENSSGRP00000034600	LOC107567956	ENSSGRP00000034600	ENSSGRP00000030222	MICAL-like protein 1.	Ras-related protein Rab-35.	0.420
ENSSGRP00000035467	ENSSGRP00000010201	ENSSGRP00000035467	ENSSGRP00000010201	annotation not available	annotation not available	0.424
ENSSGRP00000035467	ENSSGRP00000034600	ENSSGRP00000035467	ENSSGRP00000034600	annotation not available	MICAL-like protein 1.	0.420
ENSSGRP00000035467	ENSSGRP00000048468	ENSSGRP00000035467	ENSSGRP00000048468	annotation not available	ADP-ribosylation factor 6b.	0.424
ENSSGRP00000035467	LOC107574486	ENSSGRP00000035467	ENSSGRP00000013820	annotation not available	ADP-ribosylation factor 6-like.	0.424
ENSSGRP00000048468	ENSSGRP00000035467	ENSSGRP00000048468	ENSSGRP00000035467	ADP-ribosylation factor 6b.	annotation not available	0.424
ENSSGRP00000048468	ENSSGRP00000062023	ENSSGRP00000048468	ENSSGRP00000062023	ADP-ribosylation factor 6b.	Ras-related protein Rab-35-like.	0.424