(12 nodes) Swimming behavior network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107601814	Protein atonal homolog 7. (136 aa)
	ENSSGRP00000096325	Abhydrolase domain containing 12. (382 aa)
	ENSSGRP00000086220	Presenilin-1-like. (420 aa)
	LOC107583518	Monoacylglycerol lipase ABHD12. (418 aa)
	ENSSGRP00000077853	Unconventional myosin-IXb-like isoform X1. (1969 aa)
	ENSSGRP00000065182	ATP-binding cassette, sub-family D (ALD), member 1. (693 aa)
	ENSSGRP00000040426	Presenilin 1. (409 aa)
	ENSSGRP00000037214	ATP-binding cassette, subfamily D (ALD), member 1. (775 aa)
	ENSSGRP00000032414	Myosin IXAa. (2403 aa)
	ENSSGRP00000021669	Myosin IXAa. (2466 aa)
	ENSSGRP00000102520	Myosin IXAb. (1953 aa)
	ENSSGRP00000011903	Unconventional myosin-IXb-like isoform X1. (1932 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000021669	ENSSGRP00000037214	Myosin IXAa.	ATP-binding cassette, subfamily D (ALD), member 1.	0.490
ENSSGRP00000021669	ENSSGRP00000065182	Myosin IXAa.	ATP-binding cassette, sub-family D (ALD), member 1.	0.490
ENSSGRP00000032414	ENSSGRP00000037214	Myosin IXAa.	ATP-binding cassette, subfamily D (ALD), member 1.	0.481
ENSSGRP00000032414	ENSSGRP00000065182	Myosin IXAa.	ATP-binding cassette, sub-family D (ALD), member 1.	0.481
ENSSGRP00000037214	ENSSGRP00000021669	ATP-binding cassette, subfamily D (ALD), member 1.	Myosin IXAa.	0.490
ENSSGRP00000037214	ENSSGRP00000032414	ATP-binding cassette, subfamily D (ALD), member 1.	Myosin IXAa.	0.481
ENSSGRP00000065182	ENSSGRP00000021669	ATP-binding cassette, sub-family D (ALD), member 1.	Myosin IXAa.	0.490
ENSSGRP00000065182	ENSSGRP00000032414	ATP-binding cassette, sub-family D (ALD), member 1.	Myosin IXAa.	0.481