(16 nodes) Cellular response to increased oxygen levels network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000071353	annotation not available (121 aa)
	LOC107592604	Transmembrane protein 199-like. (238 aa)
	LOC107584963	V-type proton ATPase catalytic subunit A-like. (622 aa)
	LOC107592296	V-type proton ATPase catalytic subunit A-like isoform X1. (621 aa)
	LOC107599937	V-type proton ATPase catalytic subunit A. (638 aa)
	LOC107591235	V-type proton ATPase catalytic subunit A-like. (617 aa)
	LOC107566902	V-type H+-transporting ATPase subunit G. (173 aa)
	LOC107568477	V-type H+-transporting ATPase S1 subunit. (467 aa)
	LOC107548952	V-type H+-transporting ATPase subunit d. (350 aa)
	ENSSGRP00000024090	ATPase H+ transporting accessory protein 1b. (294 aa)
	LOC107563463	V-type H+-transporting ATPase subunit d. (359 aa)
	ENSSGRP00000019432	V-type proton ATPase subunit S1-like. (145 aa)
	ENSSGRP00000019388	annotation not available (148 aa)
	LOC107583548	Tumor necrosis factor receptor superfamily member 6-like. (306 aa)
	LOC107554068	Tumor necrosis factor receptor superfamily member 6-like isoform X1. (298 aa)
	LOC107566178	V-type H+-transporting ATPase S1 subunit. (466 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000019388	LOC107548952	ENSSGRP00000019388	ENSSGRP00000027174	annotation not available	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000019388	LOC107563463	ENSSGRP00000019388	ENSSGRP00000021678	annotation not available	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000019388	LOC107566902	ENSSGRP00000019388	ENSSGRP00000029547	annotation not available	V-type H+-transporting ATPase subunit G.	0.985
ENSSGRP00000019388	LOC107584963	ENSSGRP00000019388	ENSSGRP00000091945	annotation not available	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000019388	LOC107591235	ENSSGRP00000019388	ENSSGRP00000049343	annotation not available	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000019388	LOC107592296	ENSSGRP00000019388	ENSSGRP00000079209	annotation not available	V-type proton ATPase catalytic subunit A-like isoform X1.	0.894
ENSSGRP00000019388	LOC107599937	ENSSGRP00000019388	ENSSGRP00000058318	annotation not available	V-type proton ATPase catalytic subunit A.	0.894
ENSSGRP00000019432	LOC107548952	ENSSGRP00000019432	ENSSGRP00000027174	V-type proton ATPase subunit S1-like.	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000019432	LOC107563463	ENSSGRP00000019432	ENSSGRP00000021678	V-type proton ATPase subunit S1-like.	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000019432	LOC107566902	ENSSGRP00000019432	ENSSGRP00000029547	V-type proton ATPase subunit S1-like.	V-type H+-transporting ATPase subunit G.	0.985
ENSSGRP00000019432	LOC107584963	ENSSGRP00000019432	ENSSGRP00000091945	V-type proton ATPase subunit S1-like.	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000019432	LOC107591235	ENSSGRP00000019432	ENSSGRP00000049343	V-type proton ATPase subunit S1-like.	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000019432	LOC107592296	ENSSGRP00000019432	ENSSGRP00000079209	V-type proton ATPase subunit S1-like.	V-type proton ATPase catalytic subunit A-like isoform X1.	0.894
ENSSGRP00000019432	LOC107599937	ENSSGRP00000019432	ENSSGRP00000058318	V-type proton ATPase subunit S1-like.	V-type proton ATPase catalytic subunit A.	0.894
ENSSGRP00000024090	LOC107548952	ENSSGRP00000024090	ENSSGRP00000027174	ATPase H+ transporting accessory protein 1b.	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000024090	LOC107563463	ENSSGRP00000024090	ENSSGRP00000021678	ATPase H+ transporting accessory protein 1b.	V-type H+-transporting ATPase subunit d.	0.978
ENSSGRP00000024090	LOC107566902	ENSSGRP00000024090	ENSSGRP00000029547	ATPase H+ transporting accessory protein 1b.	V-type H+-transporting ATPase subunit G.	0.985
ENSSGRP00000024090	LOC107584963	ENSSGRP00000024090	ENSSGRP00000091945	ATPase H+ transporting accessory protein 1b.	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000024090	LOC107591235	ENSSGRP00000024090	ENSSGRP00000049343	ATPase H+ transporting accessory protein 1b.	V-type proton ATPase catalytic subunit A-like.	0.894
ENSSGRP00000024090	LOC107592296	ENSSGRP00000024090	ENSSGRP00000079209	ATPase H+ transporting accessory protein 1b.	V-type proton ATPase catalytic subunit A-like isoform X1.	0.894