(15 nodes) Embryonic cleavage network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107567698	Cullin-3-B-like isoform X1. (774 aa)
	ENSSGRP00000084106	annotation not available (121 aa)
	ENSSGRP00000109219	DNA topoisomerase I. (515 aa)
	LOC107562865	DNA topoisomerase 1-like isoform X1. (755 aa)
	LOC107573626	Cullin-3-B-like. (774 aa)
	LOC107551306	Cullin 3. (775 aa)
	ENSSGRP00000041844	Protein AATF-like isoform X1. (529 aa)
	ENSSGRP00000052373	SAS-6 centriolar assembly protein. (435 aa)
	LOC107599727	DNA topoisomerase 1-like. (755 aa)
	ENSSGRP00000060541	Cullin-3-like. (680 aa)
	ENSSGRP00000060963	DNA topoisomerase I. (752 aa)
	LOC107553995	DNA topoisomerase I, mitochondrial-like. (744 aa)
	sass6	Spindle assembly abnormal protein 6 homolog. (645 aa)
	ENSSGRP00000077727	Excision repair cross-complementation group 2. (678 aa)
	LOC107601732	TFIIH basal transcription factor complex helicase XPD subunit. (783 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000052373	ENSSGRP00000077727	ENSSGRP00000052373	ENSSGRP00000077727	SAS-6 centriolar assembly protein.	Excision repair cross-complementation group 2.	0.628
ENSSGRP00000052373	LOC107601732	ENSSGRP00000052373	ENSSGRP00000080870	SAS-6 centriolar assembly protein.	TFIIH basal transcription factor complex helicase XPD subunit.	0.628
ENSSGRP00000077727	ENSSGRP00000052373	ENSSGRP00000077727	ENSSGRP00000052373	Excision repair cross-complementation group 2.	SAS-6 centriolar assembly protein.	0.628
ENSSGRP00000077727	sass6	ENSSGRP00000077727	ENSSGRP00000077153	Excision repair cross-complementation group 2.	Spindle assembly abnormal protein 6 homolog.	0.628
LOC107601732	ENSSGRP00000052373	ENSSGRP00000080870	ENSSGRP00000052373	TFIIH basal transcription factor complex helicase XPD subunit.	SAS-6 centriolar assembly protein.	0.628
LOC107601732	sass6	ENSSGRP00000080870	ENSSGRP00000077153	TFIIH basal transcription factor complex helicase XPD subunit.	Spindle assembly abnormal protein 6 homolog.	0.628
sass6	ENSSGRP00000077727	ENSSGRP00000077153	ENSSGRP00000077727	Spindle assembly abnormal protein 6 homolog.	Excision repair cross-complementation group 2.	0.628
sass6	LOC107601732	ENSSGRP00000077153	ENSSGRP00000080870	Spindle assembly abnormal protein 6 homolog.	TFIIH basal transcription factor complex helicase XPD subunit.	0.628