(34 nodes) SH2 domain binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107565597	Synaptogyrin-3-like. (233 aa)
	ENSSGRP00000111968	Src kinase associated phosphoprotein 2. (330 aa)
	LOC107582870	Synaptogyrin-1-like isoform X1. (223 aa)
	LOC107564392	Dystroglycan-like. (870 aa)
	LOC107582859	Serine/threonine-protein kinase NLK2-like. (475 aa)
	LOC107591648	Synaptogyrin-3-like isoform X1. (228 aa)
	ENSSGRP00000087211	Synaptogyrin-1-like. (132 aa)
	ENSSGRP00000086244	annotation not available (90 aa)
	LOC107587083	RUN and FYVE domain-containing protein 1-like isoform X1. (693 aa)
	ENSSGRP00000066797	Synaptogyrin 2b. (161 aa)
	ENSSGRP00000059386	Serine/threonine-protein kinase NLK. (515 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	LOC107572044	Synaptogyrin-2-like. (98 aa)
	LOC107555577	Phosphoprotein associated with glycosphingolipid-enriched microdomains 1-like. (334 aa)
	ENSSGRP00000048678	Nemo-like kinase, type 1. (364 aa)
	ENSSGRP00000047135	Synaptogyrin-3-like. (278 aa)
	ENSSGRP00000045620	annotation not available (93 aa)
	ENSSGRP00000045616	RUN and FYVE domain-containing protein 1-like. (596 aa)
	LOC107592827	Dystroglycan-like. (870 aa)
	LOC107590782	Synaptogyrin-1-like isoform X1. (223 aa)
	ENSSGRP00000041077	SHC SH2-domain binding protein 1. (597 aa)
	ENSSGRP00000040726	Nemo-like kinase, type 2. (311 aa)
	skap2	Src kinase-associated phosphoprotein 2. (346 aa)
	LOC107590758	Synaptogyrin-3-like. (233 aa)
	LOC107584253	Phosphoprotein associated with glycosphingolipid-enriched microdomains 1-like. (403 aa)
	LOC107571309	Synaptogyrin-2-like. (221 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	shcbp1	SHC SH2 domain-binding protein 1. (724 aa)
	LOC107575345	Sequestosome-1-like isoform X1. (476 aa)
	Skap1	Src kinase associated phosphoprotein 1. (383 aa)
	SYNGR2	Synaptogyrin-2-like. (221 aa)
	LOC107564563	Synaptogyrin-2-like isoform X1. (236 aa)
	ENSSGRP00000004976	Sequestosome-1-like. (319 aa)
	ENSSGRP00000004972	Sequestosome-1-like. (90 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004972	ENSSGRP00000004976	ENSSGRP00000004972	ENSSGRP00000004976	Sequestosome-1-like.	Sequestosome-1-like.	0.935
ENSSGRP00000004972	LOC107575345	ENSSGRP00000004972	ENSSGRP00000015322	Sequestosome-1-like.	Sequestosome-1-like isoform X1.	0.901
ENSSGRP00000004976	ENSSGRP00000004972	ENSSGRP00000004976	ENSSGRP00000004972	Sequestosome-1-like.	Sequestosome-1-like.	0.935
ENSSGRP00000004976	LOC107575345	ENSSGRP00000004976	ENSSGRP00000015322	Sequestosome-1-like.	Sequestosome-1-like isoform X1.	0.902
ENSSGRP00000045616	LOC107587083	ENSSGRP00000045616	ENSSGRP00000081908	RUN and FYVE domain-containing protein 1-like.	RUN and FYVE domain-containing protein 1-like isoform X1.	0.900
ENSSGRP00000059386	LOC107582859	ENSSGRP00000059386	ENSSGRP00000093657	Serine/threonine-protein kinase NLK.	Serine/threonine-protein kinase NLK2-like.	0.901
LOC107564392	LOC107592827	ENSSGRP00000093767	ENSSGRP00000043259	Dystroglycan-like.	Dystroglycan-like.	0.900
LOC107575345	ENSSGRP00000004972	ENSSGRP00000015322	ENSSGRP00000004972	Sequestosome-1-like isoform X1.	Sequestosome-1-like.	0.901
LOC107575345	ENSSGRP00000004976	ENSSGRP00000015322	ENSSGRP00000004976	Sequestosome-1-like isoform X1.	Sequestosome-1-like.	0.902
LOC107582859	ENSSGRP00000059386	ENSSGRP00000093657	ENSSGRP00000059386	Serine/threonine-protein kinase NLK2-like.	Serine/threonine-protein kinase NLK.	0.901
LOC107587083	ENSSGRP00000045616	ENSSGRP00000081908	ENSSGRP00000045616	RUN and FYVE domain-containing protein 1-like isoform X1.	RUN and FYVE domain-containing protein 1-like.	0.900
LOC107592827	LOC107564392	ENSSGRP00000043259	ENSSGRP00000093767	Dystroglycan-like.	Dystroglycan-like.	0.900