(9 nodes) Mast cell degranulation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000083879	Synaptosome associated protein 23.2. (147 aa)
	ENSSGRP00000071444	annotation not available (85 aa)
	ENSSGRP00000055376	RAB guanine nucleotide exchange factor (GEF) 1. (390 aa)
	LOC107592806	Synaptosomal-associated protein 23-like isoform X1. (240 aa)
	LOC107577469	Rab5 GDP/GTP exchange factor-like isoform X1. (551 aa)
	ENSSGRP00000034707	RAB guanine nucleotide exchange factor (GEF) 1, like. (455 aa)
	ENSSGRP00000040049	Synaptosomal-associated protein 23-like isoform X1. (230 aa)
	ENSSGRP00000108782	Uncharacterized protein LOC107602257. (164 aa)
	LOC107594774	Synaptosomal-associated protein 23-like. (232 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000034707	ENSSGRP00000055376	ENSSGRP00000034707	ENSSGRP00000055376	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.688
ENSSGRP00000034707	ENSSGRP00000071444	ENSSGRP00000034707	ENSSGRP00000071444	RAB guanine nucleotide exchange factor (GEF) 1, like.	annotation not available	0.681
ENSSGRP00000034707	LOC107577469	ENSSGRP00000034707	ENSSGRP00000028638	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rab5 GDP/GTP exchange factor-like isoform X1.	0.687
ENSSGRP00000040049	LOC107592806	ENSSGRP00000040049	ENSSGRP00000040052	Synaptosomal-associated protein 23-like isoform X1.	Synaptosomal-associated protein 23-like isoform X1.	0.903
ENSSGRP00000055376	ENSSGRP00000034707	ENSSGRP00000055376	ENSSGRP00000034707	RAB guanine nucleotide exchange factor (GEF) 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.688
ENSSGRP00000055376	ENSSGRP00000071444	ENSSGRP00000055376	ENSSGRP00000071444	RAB guanine nucleotide exchange factor (GEF) 1.	annotation not available	0.683
ENSSGRP00000055376	LOC107577469	ENSSGRP00000055376	ENSSGRP00000028638	RAB guanine nucleotide exchange factor (GEF) 1.	Rab5 GDP/GTP exchange factor-like isoform X1.	0.681
ENSSGRP00000071444	ENSSGRP00000034707	ENSSGRP00000071444	ENSSGRP00000034707	annotation not available	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.681
ENSSGRP00000071444	ENSSGRP00000055376	ENSSGRP00000071444	ENSSGRP00000055376	annotation not available	RAB guanine nucleotide exchange factor (GEF) 1.	0.683
ENSSGRP00000071444	LOC107577469	ENSSGRP00000071444	ENSSGRP00000028638	annotation not available	Rab5 GDP/GTP exchange factor-like isoform X1.	0.683
LOC107577469	ENSSGRP00000034707	ENSSGRP00000028638	ENSSGRP00000034707	Rab5 GDP/GTP exchange factor-like isoform X1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.687
LOC107577469	ENSSGRP00000055376	ENSSGRP00000028638	ENSSGRP00000055376	Rab5 GDP/GTP exchange factor-like isoform X1.	RAB guanine nucleotide exchange factor (GEF) 1.	0.681
LOC107577469	ENSSGRP00000071444	ENSSGRP00000028638	ENSSGRP00000071444	Rab5 GDP/GTP exchange factor-like isoform X1.	annotation not available	0.683
LOC107592806	ENSSGRP00000040049	ENSSGRP00000040052	ENSSGRP00000040049	Synaptosomal-associated protein 23-like isoform X1.	Synaptosomal-associated protein 23-like isoform X1.	0.903