(5 nodes) DNA replication proofreading network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000016326	DNA polymerase delta catalytic subunit-like. (831 aa)
	ENSSGRP00000017974	annotation not available (756 aa)
	pold1	DNA polymerase delta catalytic subunit. (1106 aa)
	ENSSGRP00000077484	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like. (1772 aa)
	POLE	DNA polymerase epsilon catalytic subunit A-like. (2039 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000016326	ENSSGRP00000077484	ENSSGRP00000016326	ENSSGRP00000077484	DNA polymerase delta catalytic subunit-like.	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	0.978
ENSSGRP00000016326	POLE	ENSSGRP00000016326	ENSSGRP00000087587	DNA polymerase delta catalytic subunit-like.	DNA polymerase epsilon catalytic subunit A-like.	0.978
ENSSGRP00000016326	pold1	ENSSGRP00000016326	ENSSGRP00000070896	DNA polymerase delta catalytic subunit-like.	DNA polymerase delta catalytic subunit.	0.901
ENSSGRP00000017974	ENSSGRP00000077484	ENSSGRP00000017974	ENSSGRP00000077484	annotation not available	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	0.978
ENSSGRP00000017974	POLE	ENSSGRP00000017974	ENSSGRP00000087587	annotation not available	DNA polymerase epsilon catalytic subunit A-like.	0.978
ENSSGRP00000077484	ENSSGRP00000016326	ENSSGRP00000077484	ENSSGRP00000016326	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	DNA polymerase delta catalytic subunit-like.	0.978
ENSSGRP00000077484	ENSSGRP00000017974	ENSSGRP00000077484	ENSSGRP00000017974	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	annotation not available	0.978
ENSSGRP00000077484	POLE	ENSSGRP00000077484	ENSSGRP00000087587	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	DNA polymerase epsilon catalytic subunit A-like.	0.901
ENSSGRP00000077484	pold1	ENSSGRP00000077484	ENSSGRP00000070896	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	DNA polymerase delta catalytic subunit.	0.978
POLE	ENSSGRP00000016326	ENSSGRP00000087587	ENSSGRP00000016326	DNA polymerase epsilon catalytic subunit A-like.	DNA polymerase delta catalytic subunit-like.	0.978
POLE	ENSSGRP00000017974	ENSSGRP00000087587	ENSSGRP00000017974	DNA polymerase epsilon catalytic subunit A-like.	annotation not available	0.978
POLE	ENSSGRP00000077484	ENSSGRP00000087587	ENSSGRP00000077484	DNA polymerase epsilon catalytic subunit A-like.	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	0.901
POLE	pold1	ENSSGRP00000087587	ENSSGRP00000070896	DNA polymerase epsilon catalytic subunit A-like.	DNA polymerase delta catalytic subunit.	0.978
pold1	ENSSGRP00000016326	ENSSGRP00000070896	ENSSGRP00000016326	DNA polymerase delta catalytic subunit.	DNA polymerase delta catalytic subunit-like.	0.901
pold1	ENSSGRP00000077484	ENSSGRP00000070896	ENSSGRP00000077484	DNA polymerase delta catalytic subunit.	LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like.	0.978
pold1	POLE	ENSSGRP00000070896	ENSSGRP00000087587	DNA polymerase delta catalytic subunit.	DNA polymerase epsilon catalytic subunit A-like.	0.978