(29 nodes) Isotype switching network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107563002	E3 ubiquitin-protein ligase RNF168-like. (451 aa)
	batf	ATF-like basic leucine zipper transcriptional factor. (124 aa)
	ENSSGRP00000105732	DNA excision repair protein ERCC-1-like. (334 aa)
	ercc1	DNA excision repair protein ERCC-1. (341 aa)
	lig4	DNA ligase 4. (910 aa)
	ENSSGRP00000094094	annotation not available (752 aa)
	BATF	Basic leucine zipper ATF-like transcription factor. (112 aa)
	LOC107582784	DNA mismatch repair protein Msh2-like. (946 aa)
	ENSSGRP00000086117	E3 ubiquitin-protein ligase RNF8-like. (86 aa)
	EXOSC3	Exosome complex component RRP40. (275 aa)
	ENSSGRP00000065742	annotation not available (119 aa)
	ENSSGRP00000065739	Uracil DNA glycosylase a. (268 aa)
	rnf8	E3 ubiquitin-protein ligase RNF8 isoform X1. (532 aa)
	ENSSGRP00000064482	annotation not available (215 aa)
	ENSSGRP00000060416	annotation not available (107 aa)
	ENSSGRP00000059625	annotation not available (290 aa)
	mlh1	DNA mismatch repair protein MLH1. (724 aa)
	LOC107601131	Tumor necrosis factor ligand superfamily member 5. (263 aa)
	LOC107598400	Single-stranded DNA cytosine deaminase-like. (210 aa)
	LOC107588437	DNA mismatch repair protein Msh6-like isoform X1. (1395 aa)
	LOC107550043	DNA mismatch repair protein Msh2-like. (936 aa)
	ENSSGRP00000002215	annotation not available (73 aa)
	LOC107549448	Single-stranded DNA cytosine deaminase-like. (210 aa)
	LOC107560323	Uracil-DNA glycosylase-like. (298 aa)
	LOC107561299	E3 ubiquitin-protein ligase RNF168-like. (465 aa)
	ENSSGRP00000014856	ATPase family AAA domain containing 5a. (971 aa)
	ENSSGRP00000013485	annotation not available (223 aa)
	kiaa1841	Uncharacterized protein KIAA1841 homolog isoform X1. (737 aa)
	LOC107553562	Peroxisomal membrane protein PEX13-like. (524 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BATF	ENSSGRP00000002215	ENSSGRP00000088812	ENSSGRP00000002215	Basic leucine zipper ATF-like transcription factor.	annotation not available	0.484
ENSSGRP00000002215	BATF	ENSSGRP00000002215	ENSSGRP00000088812	annotation not available	Basic leucine zipper ATF-like transcription factor.	0.484
ENSSGRP00000014856	ENSSGRP00000059625	ENSSGRP00000014856	ENSSGRP00000059625	ATPase family AAA domain containing 5a.	annotation not available	0.572
ENSSGRP00000014856	ENSSGRP00000060416	ENSSGRP00000014856	ENSSGRP00000060416	ATPase family AAA domain containing 5a.	annotation not available	0.713
ENSSGRP00000014856	LOC107550043	ENSSGRP00000014856	ENSSGRP00000041943	ATPase family AAA domain containing 5a.	DNA mismatch repair protein Msh2-like.	0.484
ENSSGRP00000014856	LOC107582784	ENSSGRP00000014856	ENSSGRP00000087509	ATPase family AAA domain containing 5a.	DNA mismatch repair protein Msh2-like.	0.484
ENSSGRP00000014856	LOC107588437	ENSSGRP00000014856	ENSSGRP00000042279	ATPase family AAA domain containing 5a.	DNA mismatch repair protein Msh6-like isoform X1.	0.572
ENSSGRP00000014856	lig4	ENSSGRP00000014856	ENSSGRP00000098554	ATPase family AAA domain containing 5a.	DNA ligase 4.	0.713
ENSSGRP00000014856	mlh1	ENSSGRP00000014856	ENSSGRP00000059287	ATPase family AAA domain containing 5a.	DNA mismatch repair protein MLH1.	0.467
ENSSGRP00000059625	ENSSGRP00000014856	ENSSGRP00000059625	ENSSGRP00000014856	annotation not available	ATPase family AAA domain containing 5a.	0.572
ENSSGRP00000059625	ENSSGRP00000060416	ENSSGRP00000059625	ENSSGRP00000060416	annotation not available	annotation not available	0.659
ENSSGRP00000059625	ENSSGRP00000065739	ENSSGRP00000059625	ENSSGRP00000065739	annotation not available	Uracil DNA glycosylase a.	0.597
ENSSGRP00000059625	ENSSGRP00000065742	ENSSGRP00000059625	ENSSGRP00000065742	annotation not available	annotation not available	0.597
ENSSGRP00000059625	ENSSGRP00000094094	ENSSGRP00000059625	ENSSGRP00000094094	annotation not available	annotation not available	0.572
ENSSGRP00000059625	ENSSGRP00000105732	ENSSGRP00000059625	ENSSGRP00000105732	annotation not available	DNA excision repair protein ERCC-1-like.	0.731
ENSSGRP00000059625	LOC107549448	ENSSGRP00000059625	ENSSGRP00000026863	annotation not available	Single-stranded DNA cytosine deaminase-like.	0.429
ENSSGRP00000059625	LOC107550043	ENSSGRP00000059625	ENSSGRP00000041943	annotation not available	DNA mismatch repair protein Msh2-like.	0.999
ENSSGRP00000059625	LOC107560323	ENSSGRP00000059625	ENSSGRP00000026222	annotation not available	Uracil-DNA glycosylase-like.	0.597
ENSSGRP00000059625	LOC107582784	ENSSGRP00000059625	ENSSGRP00000087509	annotation not available	DNA mismatch repair protein Msh2-like.	0.999
ENSSGRP00000059625	LOC107598400	ENSSGRP00000059625	ENSSGRP00000045631	annotation not available	Single-stranded DNA cytosine deaminase-like.	0.429