(15 nodes) CXCR chemokine receptor binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000061155	Itchy E3 ubiquitin protein ligase b. (849 aa)
	ENSSGRP00000051742	Itchy E3 ubiquitin protein ligase b. (797 aa)
	ENSSGRP00000051023	Itchy E3 ubiquitin protein ligase a. (826 aa)
	LOC107566036	Stromal cell-derived factor 1-like. (97 aa)
	ENSSGRP00000049066	E3 ubiquitin-protein ligase Itchy-like. (765 aa)
	ENSSGRP00000049062	E3 ubiquitin-protein ligase Itchy-like. (316 aa)
	LOC107562973	Interleukin-8-like. (98 aa)
	LOC107552557	C-X-C motif chemokine 11-like. (121 aa)
	ENSSGRP00000105584	Interleukin-8-like. (95 aa)
	ENSSGRP00000089853	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1). (90 aa)
	LOC107553579	C-X-C motif chemokine 11-like. (142 aa)
	ENSSGRP00000089497	annotation not available (104 aa)
	ENSSGRP00000089495	annotation not available (132 aa)
	LOC107566675	Stromal cell-derived factor 1-like. (97 aa)
	LOC107588617	Stromal cell-derived factor 1-like isoform X1. (99 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000049062	ENSSGRP00000049066	ENSSGRP00000049062	ENSSGRP00000049066	E3 ubiquitin-protein ligase Itchy-like.	E3 ubiquitin-protein ligase Itchy-like.	0.900
ENSSGRP00000049066	ENSSGRP00000049062	ENSSGRP00000049066	ENSSGRP00000049062	E3 ubiquitin-protein ligase Itchy-like.	E3 ubiquitin-protein ligase Itchy-like.	0.900
ENSSGRP00000089495	ENSSGRP00000089853	ENSSGRP00000089495	ENSSGRP00000089853	annotation not available	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).	0.735
ENSSGRP00000089495	ENSSGRP00000105584	ENSSGRP00000089495	ENSSGRP00000105584	annotation not available	Interleukin-8-like.	0.640
ENSSGRP00000089495	LOC107552557	ENSSGRP00000089495	ENSSGRP00000106465	annotation not available	C-X-C motif chemokine 11-like.	0.411
ENSSGRP00000089495	LOC107553579	ENSSGRP00000089495	ENSSGRP00000089657	annotation not available	C-X-C motif chemokine 11-like.	0.411
ENSSGRP00000089495	LOC107562973	ENSSGRP00000089495	ENSSGRP00000026338	annotation not available	Interleukin-8-like.	0.640
ENSSGRP00000089495	LOC107566036	ENSSGRP00000089495	ENSSGRP00000112102	annotation not available	Stromal cell-derived factor 1-like.	0.735
ENSSGRP00000089495	LOC107566675	ENSSGRP00000089495	ENSSGRP00000073698	annotation not available	Stromal cell-derived factor 1-like.	0.735
ENSSGRP00000089495	LOC107588617	ENSSGRP00000089495	ENSSGRP00000071778	annotation not available	Stromal cell-derived factor 1-like isoform X1.	0.735
ENSSGRP00000089497	ENSSGRP00000089853	ENSSGRP00000089497	ENSSGRP00000089853	annotation not available	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).	0.735
ENSSGRP00000089497	ENSSGRP00000105584	ENSSGRP00000089497	ENSSGRP00000105584	annotation not available	Interleukin-8-like.	0.640
ENSSGRP00000089497	LOC107552557	ENSSGRP00000089497	ENSSGRP00000106465	annotation not available	C-X-C motif chemokine 11-like.	0.411
ENSSGRP00000089497	LOC107553579	ENSSGRP00000089497	ENSSGRP00000089657	annotation not available	C-X-C motif chemokine 11-like.	0.411
ENSSGRP00000089497	LOC107562973	ENSSGRP00000089497	ENSSGRP00000026338	annotation not available	Interleukin-8-like.	0.640
ENSSGRP00000089497	LOC107566036	ENSSGRP00000089497	ENSSGRP00000112102	annotation not available	Stromal cell-derived factor 1-like.	0.735
ENSSGRP00000089497	LOC107566675	ENSSGRP00000089497	ENSSGRP00000073698	annotation not available	Stromal cell-derived factor 1-like.	0.735
ENSSGRP00000089497	LOC107588617	ENSSGRP00000089497	ENSSGRP00000071778	annotation not available	Stromal cell-derived factor 1-like isoform X1.	0.735
ENSSGRP00000089853	ENSSGRP00000089495	ENSSGRP00000089853	ENSSGRP00000089495	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).	annotation not available	0.735
ENSSGRP00000089853	ENSSGRP00000089497	ENSSGRP00000089853	ENSSGRP00000089497	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).	annotation not available	0.735