(41 nodes) mRNA cis splicing, via spliceosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000029246	DnaJ homolog subfamily C member 8-like. (179 aa)
	ENSSGRP00000001670	PC4 and SFRS1-interacting protein-like isoform X1. (411 aa)
	ENSSGRP00000005325	annotation not available (375 aa)
	ENSSGRP00000006053	Splicing factor 45-like. (101 aa)
	prpf40a	Pre-mRNA-processing factor 40 homolog A isoform X1. (851 aa)
	ENSSGRP00000007511	annotation not available (253 aa)
	ENSSGRP00000009038	M7GpppX diphosphatase-like. (217 aa)
	ENSSGRP00000012321	annotation not available (100 aa)
	ncbp2	Nuclear cap-binding protein subunit 2. (162 aa)
	prpf39	Pre-mRNA-processing factor 39 isoform X1. (747 aa)
	LOC107598186	Serine/threonine-protein kinase PRP4 homolog. (1016 aa)
	LOC107599251	Cactin-like isoform X1. (823 aa)
	ENSSGRP00000019428	Cilia- and flagella-associated protein 69-like. (54 aa)
	ENSSGRP00000019832	DnaJ homolog subfamily C member 8-like. (221 aa)
	LOC107575440	Splicing factor 3A subunit 1-like. (536 aa)
	ENSSGRP00000021411	annotation not available (609 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1. (773 aa)
	LOC107590066	Pre-mRNA-splicing factor RBM22/SLT11. (424 aa)
	ENSSGRP00000037301	Pre-mRNA-processing factor 39-like. (191 aa)
	LOC107599886	Serine/threonine-protein kinase PRP4 homolog isoform X1. (989 aa)
	ENSSGRP00000044634	Si:ch211-114c17.1. (550 aa)
	LOC107571494	Pre-mRNA-splicing factor RBM22/SLT11. (422 aa)
	LOC107587645	U1 small nuclear ribonucleoprotein C isoform X1. (159 aa)
	ENSSGRP00000046536	Splicing factor SWAP. (915 aa)
	dcps	M7GpppX diphosphatase. (318 aa)
	ENSSGRP00000050624	PC4 and SFRS1-interacting protein-like isoform X1. (151 aa)
	wbp4	WW domain-binding protein 4 isoform X1. (388 aa)
	LOC107569251	Nuclear cap-binding protein subunit 2-like. (104 aa)
	LOC107557038	Serine/threonine-protein kinase PRP4 homolog. (985 aa)
	LOC107592276	Protein CWC15 homolog. (244 aa)
	ENSSGRP00000092865	PRP40 pre-mRNA processing factor 40 homolog A. (632 aa)
	ENSSGRP00000092965	Pre-mRNA-splicing factor RBM22/SLT11. (381 aa)
	LOC107564451	Splicing factor 3A subunit 1-like. (784 aa)
	LOC107554722	Serine/threonine-protein kinase PRP4 homolog. (1045 aa)
	LOC107595454	U1 small nuclear ribonucleoprotein C-like. (155 aa)
	LOC107548791	Splicing factor, suppressor of white-apricot homolog. (958 aa)
	ENSSGRP00000102484	RNA binding motif protein 17. (380 aa)
	LOC107600224	Cactin-like. (821 aa)
	Rbm17	Splicing factor 45. (362 aa)
	LOC107550894	Pre-mRNA-processing factor 39-like isoform X1. (700 aa)
	pold2	Splicing factor 3A subunit 1-like. (787 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005325	ENSSGRP00000007511	ENSSGRP00000005325	ENSSGRP00000007511	annotation not available	annotation not available	0.888
ENSSGRP00000005325	ENSSGRP00000037301	ENSSGRP00000005325	ENSSGRP00000037301	annotation not available	Pre-mRNA-processing factor 39-like.	0.748
ENSSGRP00000005325	ENSSGRP00000044634	ENSSGRP00000005325	ENSSGRP00000044634	annotation not available	Si:ch211-114c17.1.	0.748
ENSSGRP00000005325	ENSSGRP00000092965	ENSSGRP00000005325	ENSSGRP00000092965	annotation not available	Pre-mRNA-splicing factor RBM22/SLT11.	0.882
ENSSGRP00000005325	LOC107550894	ENSSGRP00000005325	ENSSGRP00000112467	annotation not available	Pre-mRNA-processing factor 39-like isoform X1.	0.748
ENSSGRP00000005325	LOC107554722	ENSSGRP00000005325	ENSSGRP00000095501	annotation not available	Serine/threonine-protein kinase PRP4 homolog.	0.777
ENSSGRP00000005325	LOC107557038	ENSSGRP00000005325	ENSSGRP00000060432	annotation not available	Serine/threonine-protein kinase PRP4 homolog.	0.777
ENSSGRP00000005325	LOC107564451	ENSSGRP00000005325	ENSSGRP00000095173	annotation not available	Splicing factor 3A subunit 1-like.	0.915
ENSSGRP00000005325	LOC107569251	ENSSGRP00000005325	ENSSGRP00000055785	annotation not available	Nuclear cap-binding protein subunit 2-like.	0.737
ENSSGRP00000005325	LOC107571494	ENSSGRP00000005325	ENSSGRP00000045019	annotation not available	Pre-mRNA-splicing factor RBM22/SLT11.	0.882
ENSSGRP00000005325	LOC107575440	ENSSGRP00000005325	ENSSGRP00000020937	annotation not available	Splicing factor 3A subunit 1-like.	0.915
ENSSGRP00000005325	LOC107587645	ENSSGRP00000005325	ENSSGRP00000045447	annotation not available	U1 small nuclear ribonucleoprotein C isoform X1.	0.854
ENSSGRP00000005325	LOC107590066	ENSSGRP00000005325	ENSSGRP00000029713	annotation not available	Pre-mRNA-splicing factor RBM22/SLT11.	0.882
ENSSGRP00000005325	LOC107595454	ENSSGRP00000005325	ENSSGRP00000098977	annotation not available	U1 small nuclear ribonucleoprotein C-like.	0.854
ENSSGRP00000005325	LOC107598186	ENSSGRP00000005325	ENSSGRP00000015502	annotation not available	Serine/threonine-protein kinase PRP4 homolog.	0.777
ENSSGRP00000005325	LOC107599886	ENSSGRP00000005325	ENSSGRP00000037563	annotation not available	Serine/threonine-protein kinase PRP4 homolog isoform X1.	0.777
ENSSGRP00000005325	ncbp2	ENSSGRP00000005325	ENSSGRP00000013290	annotation not available	Nuclear cap-binding protein subunit 2.	0.737
ENSSGRP00000005325	pold2	ENSSGRP00000005325	ENSSGRP00000112881	annotation not available	Splicing factor 3A subunit 1-like.	0.915
ENSSGRP00000005325	prpf39	ENSSGRP00000005325	ENSSGRP00000013769	annotation not available	Pre-mRNA-processing factor 39 isoform X1.	0.748
ENSSGRP00000005325	wbp4	ENSSGRP00000005325	ENSSGRP00000053747	annotation not available	WW domain-binding protein 4 isoform X1.	0.888