(11 nodes) Positive regulation of erythrocyte differentiation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000036038	GATA-binding factor 1-A-like. (336 aa)
	LOC107563363	Ankyrin repeat domain-containing protein 54. (312 aa)
	ENSSGRP00000066673	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (911 aa)
	LOC107584875	Trans-acting T-cell-specific transcription factor GATA-3-like. (409 aa)
	ENSSGRP00000056021	GATA-binding factor 1-A-like. (88 aa)
	fam210b	Protein FAM210B. (235 aa)
	LOC107552268	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1-like. (1110 aa)
	LOC107552258	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1-like isoform X1. (1111 aa)
	LOC107577313	GATA-binding factor 2-like. (253 aa)
	LOC107581944	GATA-binding factor 1-B-like. (417 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1 isoform X1. (1776 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000036038	med1	ENSSGRP00000036038	ENSSGRP00000087272	GATA-binding factor 1-A-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.490
ENSSGRP00000056021	med1	ENSSGRP00000056021	ENSSGRP00000087272	GATA-binding factor 1-A-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.490
LOC107577313	med1	ENSSGRP00000009367	ENSSGRP00000087272	GATA-binding factor 2-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.490
LOC107581944	med1	ENSSGRP00000107263	ENSSGRP00000087272	GATA-binding factor 1-B-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.490
LOC107584875	med1	ENSSGRP00000064823	ENSSGRP00000087272	Trans-acting T-cell-specific transcription factor GATA-3-like.	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	0.490
med1	ENSSGRP00000036038	ENSSGRP00000087272	ENSSGRP00000036038	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	GATA-binding factor 1-A-like.	0.490
med1	ENSSGRP00000056021	ENSSGRP00000087272	ENSSGRP00000056021	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	GATA-binding factor 1-A-like.	0.490
med1	LOC107577313	ENSSGRP00000087272	ENSSGRP00000009367	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	GATA-binding factor 2-like.	0.490
med1	LOC107581944	ENSSGRP00000087272	ENSSGRP00000107263	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	GATA-binding factor 1-B-like.	0.490
med1	LOC107584875	ENSSGRP00000087272	ENSSGRP00000064823	Mediator of RNA polymerase II transcription subunit 1 isoform X1.	Trans-acting T-cell-specific transcription factor GATA-3-like.	0.490