(20 nodes) mRNA 5-UTR binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000073371	28S ribosomal protein S11, mitochondrial-like. (180 aa)
	LOC107595350	La-related protein 6-like. (600 aa)
	ENSSGRP00000093084	Serine hydroxymethyltransferase 1 (soluble). (465 aa)
	utp23	U3 small nucleolar RNA-associated protein 23. (253 aa)
	ENSSGRP00000086341	La ribonucleoprotein 6, translational regulator b. (420 aa)
	ENSSGRP00000080452	28S ribosomal protein S11, mitochondrial-like. (181 aa)
	ENSSGRP00000073376	28S ribosomal protein S11, mitochondrial-like. (185 aa)
	LOC107549193	T-complex protein 1 subunit epsilon-like. (531 aa)
	LOC107554037	Ribosomal L1 domain-containing protein 1-like. (368 aa)
	ENSSGRP00000060390	UTP23 small subunit processome component. (251 aa)
	ENSSGRP00000056823	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (855 aa)
	ENSSGRP00000053716	Serine hydroxymethyltransferase, mitochondrial-like. (456 aa)
	cct5	T-complex protein 1 subunit epsilon. (541 aa)
	LOC107581728	Serine hydroxymethyltransferase, cytosolic-like. (497 aa)
	ENSSGRP00000043434	FMRP translational regulator 1. (595 aa)
	LOC107597149	La-related protein 6-like. (477 aa)
	ENSSGRP00000018401	La-related protein 6-like. (463 aa)
	ENSSGRP00000017862	Serine hydroxymethyltransferase 2 (mitochondrial). (564 aa)
	ENSSGRP00000010987	FMRP translational regulator 1. (568 aa)
	LOC107584214	Ribosomal L1 domain-containing protein 1-like. (360 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010987	ENSSGRP00000056823	ENSSGRP00000010987	ENSSGRP00000056823	FMRP translational regulator 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.440
ENSSGRP00000043434	ENSSGRP00000056823	ENSSGRP00000043434	ENSSGRP00000056823	FMRP translational regulator 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.440
ENSSGRP00000053716	LOC107581728	ENSSGRP00000053716	ENSSGRP00000045083	Serine hydroxymethyltransferase, mitochondrial-like.	Serine hydroxymethyltransferase, cytosolic-like.	0.902
ENSSGRP00000056823	ENSSGRP00000010987	ENSSGRP00000056823	ENSSGRP00000010987	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	FMRP translational regulator 1.	0.440
ENSSGRP00000056823	ENSSGRP00000043434	ENSSGRP00000056823	ENSSGRP00000043434	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	FMRP translational regulator 1.	0.440
ENSSGRP00000056823	ENSSGRP00000073371	ENSSGRP00000056823	ENSSGRP00000073371	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	28S ribosomal protein S11, mitochondrial-like.	0.523
ENSSGRP00000056823	ENSSGRP00000073376	ENSSGRP00000056823	ENSSGRP00000073376	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	28S ribosomal protein S11, mitochondrial-like.	0.523
ENSSGRP00000056823	ENSSGRP00000080452	ENSSGRP00000056823	ENSSGRP00000080452	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	28S ribosomal protein S11, mitochondrial-like.	0.523
ENSSGRP00000060390	LOC107554037	ENSSGRP00000060390	ENSSGRP00000068660	UTP23 small subunit processome component.	Ribosomal L1 domain-containing protein 1-like.	0.817
ENSSGRP00000060390	LOC107584214	ENSSGRP00000060390	ENSSGRP00000001276	UTP23 small subunit processome component.	Ribosomal L1 domain-containing protein 1-like.	0.817
ENSSGRP00000073371	ENSSGRP00000056823	ENSSGRP00000073371	ENSSGRP00000056823	28S ribosomal protein S11, mitochondrial-like.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.523
ENSSGRP00000073371	ENSSGRP00000073376	ENSSGRP00000073371	ENSSGRP00000073376	28S ribosomal protein S11, mitochondrial-like.	28S ribosomal protein S11, mitochondrial-like.	0.902
ENSSGRP00000073371	ENSSGRP00000080452	ENSSGRP00000073371	ENSSGRP00000080452	28S ribosomal protein S11, mitochondrial-like.	28S ribosomal protein S11, mitochondrial-like.	0.902
ENSSGRP00000073371	LOC107554037	ENSSGRP00000073371	ENSSGRP00000068660	28S ribosomal protein S11, mitochondrial-like.	Ribosomal L1 domain-containing protein 1-like.	0.714
ENSSGRP00000073371	LOC107584214	ENSSGRP00000073371	ENSSGRP00000001276	28S ribosomal protein S11, mitochondrial-like.	Ribosomal L1 domain-containing protein 1-like.	0.714
ENSSGRP00000073376	ENSSGRP00000056823	ENSSGRP00000073376	ENSSGRP00000056823	28S ribosomal protein S11, mitochondrial-like.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.523
ENSSGRP00000073376	ENSSGRP00000073371	ENSSGRP00000073376	ENSSGRP00000073371	28S ribosomal protein S11, mitochondrial-like.	28S ribosomal protein S11, mitochondrial-like.	0.902
ENSSGRP00000073376	ENSSGRP00000080452	ENSSGRP00000073376	ENSSGRP00000080452	28S ribosomal protein S11, mitochondrial-like.	28S ribosomal protein S11, mitochondrial-like.	0.900
ENSSGRP00000073376	LOC107554037	ENSSGRP00000073376	ENSSGRP00000068660	28S ribosomal protein S11, mitochondrial-like.	Ribosomal L1 domain-containing protein 1-like.	0.714
ENSSGRP00000073376	LOC107584214	ENSSGRP00000073376	ENSSGRP00000001276	28S ribosomal protein S11, mitochondrial-like.	Ribosomal L1 domain-containing protein 1-like.	0.714