(18 nodes) COPII vesicle coating network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000110176	Programmed cell death 6. (143 aa)
	Sec16b	COPII coat assembly protein SEC16. (418 aa)
	LOC107600409	Protein TFG-like. (388 aa)
	preb	Prolactin regulatory element-binding protein. (424 aa)
	Pdcd6	Programmed cell death protein 6. (174 aa)
	LOC107573626	Cullin-3-B-like. (774 aa)
	KLHL12	Kelch-like protein 12. (564 aa)
	LOC107551306	Cullin 3. (775 aa)
	ENSSGRP00000040188	Peflin-like. (282 aa)
	LOC107598936	Prolactin regulatory element-binding protein-like. (389 aa)
	ENSSGRP00000060541	Cullin-3-like. (680 aa)
	ENSSGRP00000066590	annotation not available (138 aa)
	ENSSGRP00000066592	annotation not available (138 aa)
	ENSSGRP00000072291	penta-EF-hand domain containing 1. (165 aa)
	LOC107567698	Cullin-3-B-like isoform X1. (774 aa)
	ENSSGRP00000089909	annotation not available (1974 aa)
	ENSSGRP00000092561	Kelch-like protein 23. (336 aa)
	KLHL12-2	Kelch-like protein 12. (564 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000040188	ENSSGRP00000060541	ENSSGRP00000040188	ENSSGRP00000060541	Peflin-like.	Cullin-3-like.	0.478
ENSSGRP00000040188	ENSSGRP00000092561	ENSSGRP00000040188	ENSSGRP00000092561	Peflin-like.	Kelch-like protein 23.	0.545
ENSSGRP00000040188	KLHL12	ENSSGRP00000040188	ENSSGRP00000023322	Peflin-like.	Kelch-like protein 12.	0.545
ENSSGRP00000040188	KLHL12-2	ENSSGRP00000040188	ENSSGRP00000096339	Peflin-like.	Kelch-like protein 12.	0.545
ENSSGRP00000040188	LOC107551306	ENSSGRP00000040188	ENSSGRP00000037856	Peflin-like.	Cullin 3.	0.478
ENSSGRP00000040188	LOC107573626	ENSSGRP00000040188	ENSSGRP00000020842	Peflin-like.	Cullin-3-B-like.	0.581
ENSSGRP00000060541	ENSSGRP00000040188	ENSSGRP00000060541	ENSSGRP00000040188	Cullin-3-like.	Peflin-like.	0.478
ENSSGRP00000060541	ENSSGRP00000072291	ENSSGRP00000060541	ENSSGRP00000072291	Cullin-3-like.	penta-EF-hand domain containing 1.	0.478
ENSSGRP00000060541	ENSSGRP00000092561	ENSSGRP00000060541	ENSSGRP00000092561	Cullin-3-like.	Kelch-like protein 23.	0.882
ENSSGRP00000060541	KLHL12	ENSSGRP00000060541	ENSSGRP00000023322	Cullin-3-like.	Kelch-like protein 12.	0.882
ENSSGRP00000060541	KLHL12-2	ENSSGRP00000060541	ENSSGRP00000096339	Cullin-3-like.	Kelch-like protein 12.	0.882
ENSSGRP00000066590	LOC107598936	ENSSGRP00000066590	ENSSGRP00000044265	annotation not available	Prolactin regulatory element-binding protein-like.	0.649
ENSSGRP00000066590	LOC107600409	ENSSGRP00000066590	ENSSGRP00000014762	annotation not available	Protein TFG-like.	0.872
ENSSGRP00000066590	preb	ENSSGRP00000066590	ENSSGRP00000019695	annotation not available	Prolactin regulatory element-binding protein.	0.649
ENSSGRP00000066592	LOC107598936	ENSSGRP00000066592	ENSSGRP00000044265	annotation not available	Prolactin regulatory element-binding protein-like.	0.649
ENSSGRP00000066592	LOC107600409	ENSSGRP00000066592	ENSSGRP00000014762	annotation not available	Protein TFG-like.	0.872
ENSSGRP00000066592	preb	ENSSGRP00000066592	ENSSGRP00000019695	annotation not available	Prolactin regulatory element-binding protein.	0.649
ENSSGRP00000072291	ENSSGRP00000060541	ENSSGRP00000072291	ENSSGRP00000060541	penta-EF-hand domain containing 1.	Cullin-3-like.	0.478
ENSSGRP00000072291	ENSSGRP00000092561	ENSSGRP00000072291	ENSSGRP00000092561	penta-EF-hand domain containing 1.	Kelch-like protein 23.	0.545
ENSSGRP00000072291	KLHL12	ENSSGRP00000072291	ENSSGRP00000023322	penta-EF-hand domain containing 1.	Kelch-like protein 12.	0.545