(46 nodes) Synaptic vesicle membrane organization network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107592806	Synaptosomal-associated protein 23-like isoform X1. (240 aa)
	ENSSGRP00000107132	Synaptosome associated protein 47. (366 aa)
	ENSSGRP00000105332	annotation not available (93 aa)
	ENSSGRP00000105331	Syntaxin-1B-like. (180 aa)
	LOC107563919	SNARE-associated protein Snapin-like. (129 aa)
	LOC107584077	Syntaxin-4-like. (297 aa)
	LOC107559592	Synaptosomal-associated protein 29-like. (264 aa)
	LOC107586606	Synaptosomal-associated protein 25-B-like. (203 aa)
	LOC107586662	Syntaxin-11-like. (293 aa)
	LOC107558015	Synaptosomal-associated protein 47 isoform X1. (419 aa)
	ENSSGRP00000090386	Proline-rich transmembrane protein 2. (120 aa)
	ENSSGRP00000090105	Proline-rich transmembrane protein 2-like. (112 aa)
	LOC107594774	Synaptosomal-associated protein 23-like. (232 aa)
	ENSSGRP00000083879	Synaptosome associated protein 23.2. (147 aa)
	LOC107556142	Syntaxin-11-like. (295 aa)
	LOC107556141	Syntaxin-11-like. (291 aa)
	SNAP25	Synaptosome associated protein 25. (187 aa)
	LOC107560055	Synaptosomal-associated protein 29-like. (264 aa)
	STX19	Syntaxin 11. (291 aa)
	LOC107552638	Syntaxin 1B/2/3. (354 aa)
	LOC107555115	Syntaxin-2-like isoform X1. (309 aa)
	ENSSGRP00000074801	Syntaxin 1B/2/3. (276 aa)
	LOC107554065	Syntaxin-4-like isoform X1. (315 aa)
	Stx1a	Syntaxin-1A isoform X1. (303 aa)
	LOC107599071	Synaptosomal-associated protein 25-A. (204 aa)
	ENSSGRP00000066797	Synaptogyrin 2b. (161 aa)
	ENSSGRP00000066196	annotation not available (188 aa)
	ENSSGRP00000064888	Proline-rich transmembrane protein 2-like. (134 aa)
	ENSSGRP00000062961	Adaptor related protein complex 3 subunit delta 1. (1209 aa)
	LOC107589629	Synaptosomal-associated protein 25-B. (203 aa)
	ENSSGRP00000060373	Tumor suppressor candidate 5 homolog isoform X1. (134 aa)
	LOC107572044	Synaptogyrin-2-like. (98 aa)
	ENSSGRP00000050955	Syntaxin-3-like. (195 aa)
	LOC107594135	Syntaxin-11-like. (293 aa)
	LOC107550075	SNARE-associated protein Snapin-like. (129 aa)
	stx1b	Syntaxin 1B/2/3. (296 aa)
	ENSSGRP00000040049	Synaptosomal-associated protein 23-like isoform X1. (230 aa)
	LOC107571309	Synaptogyrin-2-like. (221 aa)
	LOC107573539	Syntaxin-2-like isoform X1. (309 aa)
	SYNGR2	Synaptogyrin-2-like. (221 aa)
	LOC107564563	Synaptogyrin-2-like isoform X1. (236 aa)
	LOC107566207	Syntaxin-2-like isoform X1. (276 aa)
	LOC107577280	Syntaxin-11-like. (295 aa)
	LOC107577278	Syntaxin-11-like. (291 aa)
	ENSSGRP00000003754	AP-3 complex subunit delta-1-like isoform X1. (1239 aa)
	ENSSGRP00000000339	annotation not available (248 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000339	ENSSGRP00000040049	ENSSGRP00000000339	ENSSGRP00000040049	annotation not available	Synaptosomal-associated protein 23-like isoform X1.	0.668
ENSSGRP00000000339	ENSSGRP00000083879	ENSSGRP00000000339	ENSSGRP00000083879	annotation not available	Synaptosome associated protein 23.2.	0.668
ENSSGRP00000000339	ENSSGRP00000107132	ENSSGRP00000000339	ENSSGRP00000107132	annotation not available	Synaptosome associated protein 47.	0.627
ENSSGRP00000000339	LOC107558015	ENSSGRP00000000339	ENSSGRP00000096517	annotation not available	Synaptosomal-associated protein 47 isoform X1.	0.627
ENSSGRP00000000339	LOC107559592	ENSSGRP00000000339	ENSSGRP00000101047	annotation not available	Synaptosomal-associated protein 29-like.	0.721
ENSSGRP00000000339	LOC107560055	ENSSGRP00000000339	ENSSGRP00000079572	annotation not available	Synaptosomal-associated protein 29-like.	0.721
ENSSGRP00000000339	LOC107586606	ENSSGRP00000000339	ENSSGRP00000100209	annotation not available	Synaptosomal-associated protein 25-B-like.	0.823
ENSSGRP00000000339	LOC107589629	ENSSGRP00000000339	ENSSGRP00000062098	annotation not available	Synaptosomal-associated protein 25-B.	0.823
ENSSGRP00000000339	LOC107592806	ENSSGRP00000000339	ENSSGRP00000040052	annotation not available	Synaptosomal-associated protein 23-like isoform X1.	0.668
ENSSGRP00000000339	LOC107594774	ENSSGRP00000000339	ENSSGRP00000083881	annotation not available	Synaptosomal-associated protein 23-like.	0.668
ENSSGRP00000000339	LOC107599071	ENSSGRP00000000339	ENSSGRP00000067586	annotation not available	Synaptosomal-associated protein 25-A.	0.823
ENSSGRP00000000339	SNAP25	ENSSGRP00000000339	ENSSGRP00000082108	annotation not available	Synaptosome associated protein 25.	0.823
ENSSGRP00000003754	LOC107550075	ENSSGRP00000003754	ENSSGRP00000045657	AP-3 complex subunit delta-1-like isoform X1.	SNARE-associated protein Snapin-like.	0.585
ENSSGRP00000003754	LOC107563919	ENSSGRP00000003754	ENSSGRP00000104890	AP-3 complex subunit delta-1-like isoform X1.	SNARE-associated protein Snapin-like.	0.585
ENSSGRP00000040049	ENSSGRP00000000339	ENSSGRP00000040049	ENSSGRP00000000339	Synaptosomal-associated protein 23-like isoform X1.	annotation not available	0.668
ENSSGRP00000040049	ENSSGRP00000050955	ENSSGRP00000040049	ENSSGRP00000050955	Synaptosomal-associated protein 23-like isoform X1.	Syntaxin-3-like.	0.668
ENSSGRP00000040049	ENSSGRP00000066196	ENSSGRP00000040049	ENSSGRP00000066196	Synaptosomal-associated protein 23-like isoform X1.	annotation not available	0.668
ENSSGRP00000040049	ENSSGRP00000074801	ENSSGRP00000040049	ENSSGRP00000074801	Synaptosomal-associated protein 23-like isoform X1.	Syntaxin 1B/2/3.	0.930
ENSSGRP00000040049	ENSSGRP00000105331	ENSSGRP00000040049	ENSSGRP00000105331	Synaptosomal-associated protein 23-like isoform X1.	Syntaxin-1B-like.	0.930
ENSSGRP00000040049	ENSSGRP00000105332	ENSSGRP00000040049	ENSSGRP00000105332	Synaptosomal-associated protein 23-like isoform X1.	annotation not available	0.668