(51 nodes) Positive regulation of viral process network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107578603	Vacuolar protein sorting-associated protein 37B-like. (252 aa)
	TMEM250-2	Transmembrane protein 250. (139 aa)
	ENSSGRP00000089130	Beta-galactoside-binding lectin-like. (125 aa)
	LOC107599211	Transmembrane protease serine 4-like isoform X1. (434 aa)
	RSF1	Remodeling and spacing factor 1-like. (1011 aa)
	LOC107598028	DNA topoisomerase 2-alpha-like. (1567 aa)
	tsg101	Tumor susceptibility 101. (405 aa)
	atg12	Ubiquitin-like protein ATG12. (120 aa)
	LOC107565242	DNA topoisomerase 2-beta-like. (1580 aa)
	ENSSGRP00000042554	Uncharacterized protein LOC107598455. (465 aa)
	FKBP6	Inactive peptidyl-prolyl cis-trans isomerase FKBP6-like. (330 aa)
	ENSSGRP00000041925	Damage-specific DNA binding protein 1. (1117 aa)
	ENSSGRP00000038930	Remodeling and spacing factor 1-like isoform X1. (1633 aa)
	LOC107561486	Transmembrane protease serine 4-like isoform X1. (460 aa)
	ENSSGRP00000034618	Autophagy-related protein 5. (163 aa)
	ENSSGRP00000026048	ATG12 autophagy related 12 homolog (S. cerevisiae). (93 aa)
	pde12	2',5'-phosphodiesterase 12. (580 aa)
	ENSSGRP00000023340	annotation not available (217 aa)
	LOC107600444	Tumor susceptibility gene 101 protein-like isoform X1. (393 aa)
	LOC107573569	TBC1 domain family member 20-like isoform X1. (398 aa)
	LOC107594993	Vacuolar protein sorting-associated protein 37B-like. (288 aa)
	LOC107582078	Double-stranded RNA-specific adenosine deaminase-like. (1395 aa)
	Tsg101	Tumor susceptibility gene 101 protein. (54 aa)
	LOC107564058	Transmembrane protease serine 4-like. (460 aa)
	ENSSGRP00000008898	Uncharacterized protein LOC107578959. (355 aa)
	ENSSGRP00000006414	annotation not available (347 aa)
	ENSSGRP00000005327	Vacuolar protein sorting-associated protein 37B-like. (212 aa)
	ENSSGRP00000002474	Tumor susceptibility gene 101 protein-like. (215 aa)
	LOC107587312	Vacuolar protein sorting-associated protein 37B-like. (289 aa)
	LOC107557470	TBC1 domain family member 20-like. (394 aa)
	Atg5	Autophagy-related protein 5. (253 aa)
	ENSSGRP00000087029	annotation not available (97 aa)
	LOC107566702	Peptidyl-prolyl cis-trans isomerase D-like. (373 aa)
	LOC107595045	Double-stranded RNA-specific adenosine deaminase-like. (1392 aa)
	ENSSGRP00000066928	annotation not available (84 aa)
	ENSSGRP00000066927	annotation not available (146 aa)
	ENSSGRP00000065418	Remodeling and spacing factor 1-like. (959 aa)
	ENSSGRP00000102780	Tumor susceptibility gene 101 protein-like. (150 aa)
	LOC107568668	Beta-galactoside-binding lectin-like. (134 aa)
	TMEM250-3	Transmembrane protein 250. (139 aa)
	LOC107563214	DNA topoisomerase 2-beta-like isoform X1. (1612 aa)
	LOC107596117	Transmembrane protease serine 4-like. (435 aa)
	LOC107568169	Beta-galactoside-binding lectin-like isoform X1. (140 aa)
	ppie	Peptidyl-prolyl isomerase E (cyclophilin E). (328 aa)
	ENSSGRP00000052366	annotation not available (259 aa)
	ENSSGRP00000051817	Tumor susceptibility gene 101 protein-like. (388 aa)
	ENSSGRP00000050967	TBC1 domain family member 20-like isoform X1. (328 aa)
	LOC107586998	TBC1 domain family member 20-like. (391 aa)
	ENSSGRP00000047457	Remodeling and spacing factor 1-like isoform X1. (1635 aa)
	ppid	Peptidyl-prolyl cis-trans isomerase D. (371 aa)
	TMEM250	Transmembrane protein 250. (139 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg5	ENSSGRP00000008898	ENSSGRP00000088289	ENSSGRP00000008898	Autophagy-related protein 5.	Uncharacterized protein LOC107578959.	0.607
Atg5	ENSSGRP00000026048	ENSSGRP00000088289	ENSSGRP00000026048	Autophagy-related protein 5.	ATG12 autophagy related 12 homolog (S. cerevisiae).	0.998
Atg5	ENSSGRP00000034618	ENSSGRP00000088289	ENSSGRP00000034618	Autophagy-related protein 5.	Autophagy-related protein 5.	0.900
Atg5	ENSSGRP00000042554	ENSSGRP00000088289	ENSSGRP00000042554	Autophagy-related protein 5.	Uncharacterized protein LOC107598455.	0.607
Atg5	atg12	ENSSGRP00000088289	ENSSGRP00000046639	Autophagy-related protein 5.	Ubiquitin-like protein ATG12.	0.999
ENSSGRP00000002474	ENSSGRP00000005327	ENSSGRP00000002474	ENSSGRP00000005327	Tumor susceptibility gene 101 protein-like.	Vacuolar protein sorting-associated protein 37B-like.	0.901
ENSSGRP00000002474	LOC107578603	ENSSGRP00000002474	ENSSGRP00000013567	Tumor susceptibility gene 101 protein-like.	Vacuolar protein sorting-associated protein 37B-like.	0.901
ENSSGRP00000002474	LOC107587312	ENSSGRP00000002474	ENSSGRP00000001199	Tumor susceptibility gene 101 protein-like.	Vacuolar protein sorting-associated protein 37B-like.	0.901
ENSSGRP00000002474	LOC107594993	ENSSGRP00000002474	ENSSGRP00000016262	Tumor susceptibility gene 101 protein-like.	Vacuolar protein sorting-associated protein 37B-like.	0.901
ENSSGRP00000005327	ENSSGRP00000002474	ENSSGRP00000005327	ENSSGRP00000002474	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein-like.	0.901
ENSSGRP00000005327	ENSSGRP00000051817	ENSSGRP00000005327	ENSSGRP00000051817	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein-like.	0.901
ENSSGRP00000005327	ENSSGRP00000102780	ENSSGRP00000005327	ENSSGRP00000102780	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein-like.	0.901
ENSSGRP00000005327	LOC107600444	ENSSGRP00000005327	ENSSGRP00000021945	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein-like isoform X1.	0.901
ENSSGRP00000005327	Tsg101	ENSSGRP00000005327	ENSSGRP00000012414	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein.	0.901
ENSSGRP00000005327	tsg101	ENSSGRP00000005327	ENSSGRP00000093731	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility 101.	0.901
ENSSGRP00000008898	Atg5	ENSSGRP00000008898	ENSSGRP00000088289	Uncharacterized protein LOC107578959.	Autophagy-related protein 5.	0.607
ENSSGRP00000008898	ENSSGRP00000034618	ENSSGRP00000008898	ENSSGRP00000034618	Uncharacterized protein LOC107578959.	Autophagy-related protein 5.	0.607
ENSSGRP00000008898	ENSSGRP00000041925	ENSSGRP00000008898	ENSSGRP00000041925	Uncharacterized protein LOC107578959.	Damage-specific DNA binding protein 1.	0.626
ENSSGRP00000008898	ENSSGRP00000042554	ENSSGRP00000008898	ENSSGRP00000042554	Uncharacterized protein LOC107578959.	Uncharacterized protein LOC107598455.	0.901
ENSSGRP00000023340	ENSSGRP00000066927	ENSSGRP00000023340	ENSSGRP00000066927	annotation not available	annotation not available	0.495