(22 nodes) Anatomical structure arrangement network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000025434	annotation not available (192 aa)
	rbm7	RNA-binding protein 7 isoform X1. (249 aa)
	LOC107552650	Semaphorin-3F-like. (767 aa)
	LOC107585954	Probable RNA polymerase II nuclear localization protein SLC7A6OS. (326 aa)
	LOC107572499	78 kDa glucose-regulated protein-like isoform X1. (667 aa)
	LOC107572500	78 kDa glucose-regulated protein-like. (657 aa)
	LOC107567952	Endoplasmic reticulum chaperone BiP. (675 aa)
	ENSSGRP00000025436	annotation not available (101 aa)
	ENSSGRP00000001478	Semaphorin-3F-like isoform X1. (786 aa)
	LOC107593240	Probable RNA polymerase II nuclear localization protein SLC7A6OS isoform X1. (326 aa)
	ENSSGRP00000007030	Kinesin family member 14. (1030 aa)
	ENSSGRP00000009400	annotation not available (86 aa)
	LOC107575741	semaphorin-3F-like. (806 aa)
	ENSSGRP00000020588	78 kDa glucose-regulated protein-like. (323 aa)
	ENSSGRP00000025431	Neuropilin 2a. (875 aa)
	LOC107571545	Cadherin 2, type 1, N-cadherin. (966 aa)
	ENSSGRP00000063319	Kinesin family member 14. (1431 aa)
	ENSSGRP00000069360	Neuropilin-2-like. (806 aa)
	ENSSGRP00000074461	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa. (753 aa)
	ENSSGRP00000083443	RNA-binding protein 7-like. (243 aa)
	LOC107568336	Cadherin 2, type 1, N-cadherin. (908 aa)
	ENSSGRP00000091770	Cadherin 2, type 1, N-cadherin. (916 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001478	ENSSGRP00000009400	ENSSGRP00000001478	ENSSGRP00000009400	Semaphorin-3F-like isoform X1.	annotation not available	0.423
ENSSGRP00000001478	ENSSGRP00000025431	ENSSGRP00000001478	ENSSGRP00000025431	Semaphorin-3F-like isoform X1.	Neuropilin 2a.	0.423
ENSSGRP00000001478	ENSSGRP00000025434	ENSSGRP00000001478	ENSSGRP00000025434	Semaphorin-3F-like isoform X1.	annotation not available	0.423
ENSSGRP00000001478	ENSSGRP00000025436	ENSSGRP00000001478	ENSSGRP00000025436	Semaphorin-3F-like isoform X1.	annotation not available	0.423
ENSSGRP00000001478	ENSSGRP00000069360	ENSSGRP00000001478	ENSSGRP00000069360	Semaphorin-3F-like isoform X1.	Neuropilin-2-like.	0.423
ENSSGRP00000009400	ENSSGRP00000001478	ENSSGRP00000009400	ENSSGRP00000001478	annotation not available	Semaphorin-3F-like isoform X1.	0.423
ENSSGRP00000009400	ENSSGRP00000074461	ENSSGRP00000009400	ENSSGRP00000074461	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa.	0.423
ENSSGRP00000009400	LOC107552650	ENSSGRP00000009400	ENSSGRP00000110271	annotation not available	Semaphorin-3F-like.	0.423
ENSSGRP00000009400	LOC107575741	ENSSGRP00000009400	ENSSGRP00000015235	annotation not available	semaphorin-3F-like.	0.423
ENSSGRP00000025431	ENSSGRP00000001478	ENSSGRP00000025431	ENSSGRP00000001478	Neuropilin 2a.	Semaphorin-3F-like isoform X1.	0.423
ENSSGRP00000025431	ENSSGRP00000074461	ENSSGRP00000025431	ENSSGRP00000074461	Neuropilin 2a.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa.	0.423
ENSSGRP00000025431	LOC107552650	ENSSGRP00000025431	ENSSGRP00000110271	Neuropilin 2a.	Semaphorin-3F-like.	0.423
ENSSGRP00000025431	LOC107575741	ENSSGRP00000025431	ENSSGRP00000015235	Neuropilin 2a.	semaphorin-3F-like.	0.423
ENSSGRP00000025434	ENSSGRP00000001478	ENSSGRP00000025434	ENSSGRP00000001478	annotation not available	Semaphorin-3F-like isoform X1.	0.423
ENSSGRP00000025434	ENSSGRP00000074461	ENSSGRP00000025434	ENSSGRP00000074461	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa.	0.423
ENSSGRP00000025434	LOC107552650	ENSSGRP00000025434	ENSSGRP00000110271	annotation not available	Semaphorin-3F-like.	0.423
ENSSGRP00000025434	LOC107575741	ENSSGRP00000025434	ENSSGRP00000015235	annotation not available	semaphorin-3F-like.	0.423
ENSSGRP00000025436	ENSSGRP00000001478	ENSSGRP00000025436	ENSSGRP00000001478	annotation not available	Semaphorin-3F-like isoform X1.	0.423
ENSSGRP00000025436	ENSSGRP00000074461	ENSSGRP00000025436	ENSSGRP00000074461	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa.	0.423
ENSSGRP00000025436	LOC107552650	ENSSGRP00000025436	ENSSGRP00000110271	annotation not available	Semaphorin-3F-like.	0.423