(37 nodes) Thymus development network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000077214	MFS transporter, PCFT/HCP family, solute carrier family 46 (thymic stromal cotransporter), member 2. (450 aa)
	ENSSGRP00000036904	T-box transcription factor 1. (434 aa)
	LOC107559401	Semaphorin-3D isoform X1. (767 aa)
	ENSSGRP00000029960	Receptor-interacting serine-threonine kinase 3. (364 aa)
	LOC107564622	V(D)J recombination-activating protein 2-like. (530 aa)
	ENSSGRP00000019490	Bcl-2-like protein 11 isoform X1. (163 aa)
	LOC107564387	Mitotic spindle assembly checkpoint protein MAD1-like. (715 aa)
	ENSSGRP00000018198	Serum response factor-like. (238 aa)
	LOC107597639	Bcl-2-like protein 11. (176 aa)
	LOC107551382	Serum response factor-like. (524 aa)
	ENSSGRP00000055176	Serum response factor-like. (238 aa)
	Wdr55	WD repeat-containing protein 55 isoform X1. (385 aa)
	LOC107570385	MFS transporter, PCFT/HCP family, solute carrier family 46 (thymic stromal cotransporter), member 2. (294 aa)
	LOC107562689	Zinc finger and BTB domain-containing protein 1-like. (677 aa)
	LOC107559437	FAS-associated death domain protein-like. (192 aa)
	LOC107548559	Forkhead box protein N1-like. (546 aa)
	LOC107583239	CAAX prenyl protease 1 homolog. (484 aa)
	LOC107597276	Squamous cell carcinoma antigen recognized by T-cells 3. (959 aa)
	ENSSGRP00000058424	Mediator complex subunit 24. (910 aa)
	ENSSGRP00000040314	Mitotic spindle assembly checkpoint protein MAD1-like. (700 aa)
	LOC107595944	Squamous cell carcinoma antigen recognized by T-cells 3-like. (955 aa)
	ENSSGRP00000100921	Semaphorin-3D-like. (533 aa)
	ENSSGRP00000100916	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D. (291 aa)
	ENSSGRP00000099803	annotation not available (71 aa)
	LOC107568266	Serum response factor-like isoform X1. (285 aa)
	ENSSGRP00000091956	Mediator complex subunit 24. (937 aa)
	Atm	Serine-protein kinase ATM. (2839 aa)
	ENSSGRP00000096489	Semaphorin-3D-like. (291 aa)
	ENSSGRP00000096493	Si:dkey-49n23.1. (374 aa)
	tbx1	T-box transcription factor TBX1 isoform X1. (519 aa)
	LOC107602161	Zinc finger and BTB domain-containing protein 1-like. (675 aa)
	ENSSGRP00000059563	Receptor-interacting serine-threonine kinase 3. (332 aa)
	LOC107589739	Forkhead box protein N1-like. (546 aa)
	LOC107581808	V(D)J recombination-activating protein 2. (530 aa)
	LOC107585413	Bcl-2-like protein 11 isoform X1. (177 aa)
	ENSSGRP00000023709	annotation not available (432 aa)
	LOC107564623	V(D)J recombination-activating protein 2-like. (530 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000019490	LOC107585413	ENSSGRP00000019490	ENSSGRP00000065970	Bcl-2-like protein 11 isoform X1.	Bcl-2-like protein 11 isoform X1.	0.900
ENSSGRP00000019490	LOC107597639	ENSSGRP00000019490	ENSSGRP00000016149	Bcl-2-like protein 11 isoform X1.	Bcl-2-like protein 11.	0.900
ENSSGRP00000029960	LOC107559437	ENSSGRP00000029960	ENSSGRP00000074211	Receptor-interacting serine-threonine kinase 3.	FAS-associated death domain protein-like.	0.996
ENSSGRP00000040314	LOC107564387	ENSSGRP00000040314	ENSSGRP00000018432	Mitotic spindle assembly checkpoint protein MAD1-like.	Mitotic spindle assembly checkpoint protein MAD1-like.	0.900
ENSSGRP00000059563	LOC107559437	ENSSGRP00000059563	ENSSGRP00000074211	Receptor-interacting serine-threonine kinase 3.	FAS-associated death domain protein-like.	0.996
LOC107559437	ENSSGRP00000029960	ENSSGRP00000074211	ENSSGRP00000029960	FAS-associated death domain protein-like.	Receptor-interacting serine-threonine kinase 3.	0.996
LOC107559437	ENSSGRP00000059563	ENSSGRP00000074211	ENSSGRP00000059563	FAS-associated death domain protein-like.	Receptor-interacting serine-threonine kinase 3.	0.996
LOC107564387	ENSSGRP00000040314	ENSSGRP00000018432	ENSSGRP00000040314	Mitotic spindle assembly checkpoint protein MAD1-like.	Mitotic spindle assembly checkpoint protein MAD1-like.	0.900
LOC107564622	LOC107564623	ENSSGRP00000022708	ENSSGRP00000022709	V(D)J recombination-activating protein 2-like.	V(D)J recombination-activating protein 2-like.	0.900
LOC107564622	LOC107581808	ENSSGRP00000022708	ENSSGRP00000064562	V(D)J recombination-activating protein 2-like.	V(D)J recombination-activating protein 2.	0.900
LOC107564623	LOC107564622	ENSSGRP00000022709	ENSSGRP00000022708	V(D)J recombination-activating protein 2-like.	V(D)J recombination-activating protein 2-like.	0.900
LOC107564623	LOC107581808	ENSSGRP00000022709	ENSSGRP00000064562	V(D)J recombination-activating protein 2-like.	V(D)J recombination-activating protein 2.	0.900
LOC107581808	LOC107564622	ENSSGRP00000064562	ENSSGRP00000022708	V(D)J recombination-activating protein 2.	V(D)J recombination-activating protein 2-like.	0.900
LOC107581808	LOC107564623	ENSSGRP00000064562	ENSSGRP00000022709	V(D)J recombination-activating protein 2.	V(D)J recombination-activating protein 2-like.	0.900
LOC107585413	ENSSGRP00000019490	ENSSGRP00000065970	ENSSGRP00000019490	Bcl-2-like protein 11 isoform X1.	Bcl-2-like protein 11 isoform X1.	0.900
LOC107585413	LOC107597639	ENSSGRP00000065970	ENSSGRP00000016149	Bcl-2-like protein 11 isoform X1.	Bcl-2-like protein 11.	0.900
LOC107597639	ENSSGRP00000019490	ENSSGRP00000016149	ENSSGRP00000019490	Bcl-2-like protein 11.	Bcl-2-like protein 11 isoform X1.	0.900
LOC107597639	LOC107585413	ENSSGRP00000016149	ENSSGRP00000065970	Bcl-2-like protein 11.	Bcl-2-like protein 11 isoform X1.	0.900