(51 nodes) Digestive tract morphogenesis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002527	annotation not available (384 aa)
	ENSSGRP00000002529	annotation not available (107 aa)
	LOC107554285	Transcription factor 2, hepatocyte nuclear factor 1-beta. (558 aa)
	ENSSGRP00000007771	Atypical protein kinase C iota type. (559 aa)
	LOC107592953	T-box transcription factor TBX20. (448 aa)
	LOC107574491	Tumor protein 63-like isoform X1. (635 aa)
	ENSSGRP00000021753	Tumor protein p73-like isoform X1. (613 aa)
	LOC107581671	Noggin-3-like. (223 aa)
	LOC107568470	Secreted frizzled-related protein 2-like. (308 aa)
	LOC107582604	Transcription factor 2, hepatocyte nuclear factor 1-beta. (563 aa)
	Dll1	Delta-like protein 1. (749 aa)
	LOC107600539	T-box transcription factor TBX20-like. (443 aa)
	ENSSGRP00000034526	Tumor protein 63-like isoform X1. (630 aa)
	ENSSGRP00000034530	annotation not available (296 aa)
	Vangl2	Vang-like protein 2. (440 aa)
	ENSSGRP00000042478	Vang-like protein 2. (279 aa)
	ENSSGRP00000045010	Abelson helper integration site 1. (1032 aa)
	LOC107571274	Transcription factor 21. (176 aa)
	LOC107564214	Delta-like protein D. (608 aa)
	LOC107549058	Transcription factor 21-like. (176 aa)
	LOC107601037	Homeobox protein Nkx-2.3-like. (321 aa)
	LOC107567024	H2.0-like homeobox protein isoform X1. (356 aa)
	Sfrp2	Secreted frizzled-related protein 2. (308 aa)
	ENSSGRP00000058257	annotation not available (1082 aa)
	ENSSGRP00000058261	annotation not available (1103 aa)
	ENSSGRP00000059053	Tumor protein p73-like. (577 aa)
	ENSSGRP00000062719	Uncharacterized protein LOC107571073. (1366 aa)
	LOC107556063	Sonic hedgehog protein A. (418 aa)
	utp25	U3 small nucleolar RNA-associated protein 25. (744 aa)
	ENSSGRP00000065951	Atypical protein kinase C iota type. (566 aa)
	LOC107559382	Apoptosis regulator Bcl-2-like. (214 aa)
	ENSSGRP00000066673	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (911 aa)
	LOC107600421	Wilms tumor protein 1-interacting protein homolog. (653 aa)
	LOC107586108	Homeobox protein Nkx-2.3-like. (321 aa)
	ENSSGRP00000080182	CUGBP Elav-like family member 1. (490 aa)
	ENSSGRP00000084080	Inversin-like. (1052 aa)
	ENSSGRP00000084565	E3 ubiquitin-protein ligase mib1-like. (1027 aa)
	ENSSGRP00000084800	LOW QUALITY PROTEIN: uncharacterized protein LOC107565902. (1375 aa)
	hlx	H2.0-like homeobox protein isoform X1. (352 aa)
	LOC107558547	Apoptosis regulator Bcl-2-like. (246 aa)
	LOC107581926	Transcription factor 2, hepatocyte nuclear factor 1-beta. (535 aa)
	ENSSGRP00000092768	E3 ubiquitin-protein ligase mib1 isoform X1. (1003 aa)
	ENSSGRP00000092780	annotation not available (77 aa)
	LOC107591009	Sonic hedgehog protein A-like. (418 aa)
	LOC107590259	Apoptosis regulator Bcl-2-like. (266 aa)
	LOC107594378	Wilms tumor protein 1-interacting protein homolog. (601 aa)
	ENSSGRP00000097629	Jouberin-like. (890 aa)
	ENSSGRP00000101696	Inversin-like. (1033 aa)
	ENSSGRP00000102929	CUGBP Elav-like family member 1 isoform X1. (501 aa)
	LOC107593762	Apoptosis regulator Bcl-2-like. (207 aa)
	ENSSGRP00000108991	Transcription factor 2, hepatocyte nuclear factor 1-beta. (538 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dll1	ENSSGRP00000084565	ENSSGRP00000028871	ENSSGRP00000084565	Delta-like protein 1.	E3 ubiquitin-protein ligase mib1-like.	0.609
Dll1	ENSSGRP00000092768	ENSSGRP00000028871	ENSSGRP00000092768	Delta-like protein 1.	E3 ubiquitin-protein ligase mib1 isoform X1.	0.609
Dll1	ENSSGRP00000092780	ENSSGRP00000028871	ENSSGRP00000092780	Delta-like protein 1.	annotation not available	0.609
ENSSGRP00000002527	ENSSGRP00000066673	ENSSGRP00000002527	ENSSGRP00000066673	annotation not available	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.503
ENSSGRP00000002529	ENSSGRP00000066673	ENSSGRP00000002529	ENSSGRP00000066673	annotation not available	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.503
ENSSGRP00000007771	ENSSGRP00000065951	ENSSGRP00000007771	ENSSGRP00000065951	Atypical protein kinase C iota type.	Atypical protein kinase C iota type.	0.900
ENSSGRP00000042478	ENSSGRP00000084080	ENSSGRP00000042478	ENSSGRP00000084080	Vang-like protein 2.	Inversin-like.	0.538
ENSSGRP00000042478	ENSSGRP00000101696	ENSSGRP00000042478	ENSSGRP00000101696	Vang-like protein 2.	Inversin-like.	0.538
ENSSGRP00000042478	LOC107568470	ENSSGRP00000042478	ENSSGRP00000022680	Vang-like protein 2.	Secreted frizzled-related protein 2-like.	0.419
ENSSGRP00000042478	Sfrp2	ENSSGRP00000042478	ENSSGRP00000053156	Vang-like protein 2.	Secreted frizzled-related protein 2.	0.454
ENSSGRP00000045010	ENSSGRP00000084080	ENSSGRP00000045010	ENSSGRP00000084080	Abelson helper integration site 1.	Inversin-like.	0.652
ENSSGRP00000045010	ENSSGRP00000101696	ENSSGRP00000045010	ENSSGRP00000101696	Abelson helper integration site 1.	Inversin-like.	0.652
ENSSGRP00000062719	ENSSGRP00000084800	ENSSGRP00000062719	ENSSGRP00000084800	Uncharacterized protein LOC107571073.	LOW QUALITY PROTEIN: uncharacterized protein LOC107565902.	0.900
ENSSGRP00000065951	ENSSGRP00000007771	ENSSGRP00000065951	ENSSGRP00000007771	Atypical protein kinase C iota type.	Atypical protein kinase C iota type.	0.900
ENSSGRP00000066673	ENSSGRP00000002527	ENSSGRP00000066673	ENSSGRP00000002527	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	annotation not available	0.503
ENSSGRP00000066673	ENSSGRP00000002529	ENSSGRP00000066673	ENSSGRP00000002529	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	annotation not available	0.503
ENSSGRP00000066673	utp25	ENSSGRP00000066673	ENSSGRP00000065549	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	U3 small nucleolar RNA-associated protein 25.	0.503
ENSSGRP00000084080	ENSSGRP00000042478	ENSSGRP00000084080	ENSSGRP00000042478	Inversin-like.	Vang-like protein 2.	0.538
ENSSGRP00000084080	ENSSGRP00000045010	ENSSGRP00000084080	ENSSGRP00000045010	Inversin-like.	Abelson helper integration site 1.	0.652
ENSSGRP00000084080	ENSSGRP00000097629	ENSSGRP00000084080	ENSSGRP00000097629	Inversin-like.	Jouberin-like.	0.652