(30 nodes) Embryonic digestive tract development network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps52	Vacuolar protein sorting-associated protein 52 homolog. (725 aa)
	LOC107554285	Transcription factor 2, hepatocyte nuclear factor 1-beta. (558 aa)
	ENSSGRP00000006394	annotation not available (243 aa)
	ENSSGRP00000007198	annotation not available (661 aa)
	tgfb2	Transforming growth factor beta-2. (411 aa)
	LOC107582604	Transcription factor 2, hepatocyte nuclear factor 1-beta. (563 aa)
	LOC107582292	Lymphotoxin alpha (TNF superfamily, member 1). (244 aa)
	ENSSGRP00000040243	Transforming growth factor beta-2-like. (444 aa)
	LOC107598937	Transforming growth factor beta-2-like. (411 aa)
	Yap1	Transcriptional coactivator YAP1. (424 aa)
	LOC107571274	Transcription factor 21. (176 aa)
	LOC107549058	Transcription factor 21-like. (176 aa)
	LOC107596391	Achaete-scute homolog 1a-like isoform X1. (196 aa)
	LOC107567024	H2.0-like homeobox protein isoform X1. (356 aa)
	LOC107563086	Forkhead box protein F2-like isoform X1. (384 aa)
	LOC107556063	Sonic hedgehog protein A. (418 aa)
	LOC107586469	Extracellular tyrosine-protein kinase PKDCC&#160. (519 aa)
	LOC107589143	Transforming growth factor beta-2-like. (414 aa)
	LOC107590149	Achaete-scute complex protein. (196 aa)
	foxf2	Forkhead box protein F2. (362 aa)
	LOC107556145	Forkhead box protein F2-like. (376 aa)
	hlx	H2.0-like homeobox protein isoform X1. (352 aa)
	LOC107594843	Extracellular tyrosine-protein kinase PKDCC&#160. (470 aa)
	LOC107563378	Extracellular tyrosine-protein kinase PKDCC&#160. (475 aa)
	LOC107581926	Transcription factor 2, hepatocyte nuclear factor 1-beta. (535 aa)
	LOC107555773	Forkhead box protein F2-like. (377 aa)
	LOC107591009	Sonic hedgehog protein A-like. (418 aa)
	ENSSGRP00000105755	Transcriptional coactivator YAP1-like. (369 aa)
	ENSSGRP00000108991	Transcription factor 2, hepatocyte nuclear factor 1-beta. (538 aa)
	ENSSGRP00000111141	Extracellular tyrosine-protein kinase PKDCC&#160. (512 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007198	LOC107556063	ENSSGRP00000007198	ENSSGRP00000063780	annotation not available	Sonic hedgehog protein A.	0.678
ENSSGRP00000007198	LOC107591009	ENSSGRP00000007198	ENSSGRP00000094493	annotation not available	Sonic hedgehog protein A-like.	0.678
LOC107556063	ENSSGRP00000007198	ENSSGRP00000063780	ENSSGRP00000007198	Sonic hedgehog protein A.	annotation not available	0.678
LOC107556063	vps52	ENSSGRP00000063780	ENSSGRP00000040892	Sonic hedgehog protein A.	Vacuolar protein sorting-associated protein 52 homolog.	0.678
LOC107591009	ENSSGRP00000007198	ENSSGRP00000094493	ENSSGRP00000007198	Sonic hedgehog protein A-like.	annotation not available	0.678
LOC107591009	vps52	ENSSGRP00000094493	ENSSGRP00000040892	Sonic hedgehog protein A-like.	Vacuolar protein sorting-associated protein 52 homolog.	0.678
vps52	LOC107556063	ENSSGRP00000040892	ENSSGRP00000063780	Vacuolar protein sorting-associated protein 52 homolog.	Sonic hedgehog protein A.	0.678
vps52	LOC107591009	ENSSGRP00000040892	ENSSGRP00000094493	Vacuolar protein sorting-associated protein 52 homolog.	Sonic hedgehog protein A-like.	0.678