(47 nodes) Otolith development network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000013739	Fibroblast growth factor 3. (246 aa)
	LOC107552057	Claudin-7-B. (209 aa)
	ENSSGRP00000110706	Otolith matrix protein. (380 aa)
	ENSSGRP00000108991	Transcription factor 2, hepatocyte nuclear factor 1-beta. (538 aa)
	ENSSGRP00000108960	Solute carrier family 44 member 4. (565 aa)
	LOC107600281	Leucine-rich repeats and immunoglobulin-like domains protein 1. (1018 aa)
	ENSSGRP00000102461	Cysteine protease ATG4B-like isoform X1. (445 aa)
	LOC107586151	Claudin-7-B-like isoform X1. (209 aa)
	LOC107581926	Transcription factor 2, hepatocyte nuclear factor 1-beta. (535 aa)
	LOC107596814	Sphingosine 1-phosphate receptor 2-like. (370 aa)
	Atg5	Autophagy-related protein 5. (253 aa)
	ENSSGRP00000086400	Tetratricopeptide repeat protein 25-like. (358 aa)
	LOC107567679	Tetratricopeptide repeat protein 25-like. (530 aa)
	LOC107557343	Homeobox protein Dlx3b-like. (269 aa)
	ENSSGRP00000082114	Growth arrest-specific 8. (309 aa)
	LOC107585528	Protein jagged-1b-like. (1103 aa)
	LOC107571685	Beta-1,4-galactosyltransferase 5-like. (293 aa)
	ttc39c	Tetratricopeptide repeat protein 39C. (584 aa)
	LOC107598678	Homeobox protein Dlx3b. (269 aa)
	LOC107557776	Leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X1. (1022 aa)
	RHOB	Rho-related GTP-binding protein RhoA-D-like. (193 aa)
	LOC107591788	Rho-related GTP-binding protein RhoA-B. (193 aa)
	LOC107572672	Biogenesis of lysosome-related organelles complex 1 subunit 5-like. (154 aa)
	ENSSGRP00000052826	Otolith matrix protein 1. (376 aa)
	ENSSGRP00000050990	Solute carrier family 44 member 4. (679 aa)
	LOC107572035	Wingless-type MMTV integration site family, member 5. (380 aa)
	LOC107553896	Wingless-type MMTV integration site family, member 5. (374 aa)
	ENSSGRP00000042478	Vang-like protein 2. (279 aa)
	Vangl2	Vang-like protein 2. (440 aa)
	LOC107552278	Cysteine protease ATG4B. (394 aa)
	ENSSGRP00000039541	Biogenesis of lysosomal organelles complex-1, subunit 5, muted. (146 aa)
	LOC107597457	Midasin-like. (5455 aa)
	LOC107587933	Sphingosine 1-phosphate receptor 2. (370 aa)
	ENSSGRP00000034618	Autophagy-related protein 5. (163 aa)
	ttc36	Tetratricopeptide repeat protein 36. (187 aa)
	LOC107560771	Otolin-1-A. (496 aa)
	ENSSGRP00000029252	Fibroblast growth factor 3. (237 aa)
	LOC107582604	Transcription factor 2, hepatocyte nuclear factor 1-beta. (563 aa)
	LOC107556503	Rho-related GTP-binding protein RhoA-B-like. (200 aa)
	ENSSGRP00000013975	Otoconin 90. (850 aa)
	ENSSGRP00000012895	Growth arrest-specific protein 8-like. (216 aa)
	ENSSGRP00000011869	Protein jagged-1b. (1161 aa)
	LOC107554285	Transcription factor 2, hepatocyte nuclear factor 1-beta. (558 aa)
	LOC107590606	Tetratricopeptide repeat protein 25. (513 aa)
	LOC107593893	Otolin-1-A-like. (493 aa)
	LOC107566184	Beta-1,4-galactosyltransferase 5-like isoform X1. (418 aa)
	ENSSGRP00000000919	Tetratricopeptide repeat protein 39C-like. (546 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg5	ENSSGRP00000034618	ENSSGRP00000088289	ENSSGRP00000034618	Autophagy-related protein 5.	Autophagy-related protein 5.	0.900
Atg5	ENSSGRP00000102461	ENSSGRP00000088289	ENSSGRP00000102461	Autophagy-related protein 5.	Cysteine protease ATG4B-like isoform X1.	0.602
Atg5	LOC107552278	ENSSGRP00000088289	ENSSGRP00000041280	Autophagy-related protein 5.	Cysteine protease ATG4B.	0.602
ENSSGRP00000011869	LOC107585528	ENSSGRP00000011869	ENSSGRP00000075601	Protein jagged-1b.	Protein jagged-1b-like.	0.900
ENSSGRP00000013739	LOC107557343	ENSSGRP00000013739	ENSSGRP00000083901	Fibroblast growth factor 3.	Homeobox protein Dlx3b-like.	0.414
ENSSGRP00000013739	LOC107598678	ENSSGRP00000013739	ENSSGRP00000069092	Fibroblast growth factor 3.	Homeobox protein Dlx3b.	0.414
ENSSGRP00000013975	ENSSGRP00000039541	ENSSGRP00000013975	ENSSGRP00000039541	Otoconin 90.	Biogenesis of lysosomal organelles complex-1, subunit 5, muted.	0.607
ENSSGRP00000013975	ENSSGRP00000052826	ENSSGRP00000013975	ENSSGRP00000052826	Otoconin 90.	Otolith matrix protein 1.	0.648
ENSSGRP00000013975	ENSSGRP00000110706	ENSSGRP00000013975	ENSSGRP00000110706	Otoconin 90.	Otolith matrix protein.	0.648
ENSSGRP00000013975	LOC107560771	ENSSGRP00000013975	ENSSGRP00000031285	Otoconin 90.	Otolin-1-A.	0.652
ENSSGRP00000013975	LOC107572672	ENSSGRP00000013975	ENSSGRP00000059598	Otoconin 90.	Biogenesis of lysosome-related organelles complex 1 subunit 5-like.	0.607
ENSSGRP00000013975	LOC107593893	ENSSGRP00000013975	ENSSGRP00000002069	Otoconin 90.	Otolin-1-A-like.	0.652
ENSSGRP00000013975	LOC107597457	ENSSGRP00000013975	ENSSGRP00000037161	Otoconin 90.	Midasin-like.	0.448
ENSSGRP00000029252	LOC107557343	ENSSGRP00000029252	ENSSGRP00000083901	Fibroblast growth factor 3.	Homeobox protein Dlx3b-like.	0.414
ENSSGRP00000029252	LOC107598678	ENSSGRP00000029252	ENSSGRP00000069092	Fibroblast growth factor 3.	Homeobox protein Dlx3b.	0.414
ENSSGRP00000034618	Atg5	ENSSGRP00000034618	ENSSGRP00000088289	Autophagy-related protein 5.	Autophagy-related protein 5.	0.900
ENSSGRP00000034618	ENSSGRP00000102461	ENSSGRP00000034618	ENSSGRP00000102461	Autophagy-related protein 5.	Cysteine protease ATG4B-like isoform X1.	0.602
ENSSGRP00000034618	LOC107552278	ENSSGRP00000034618	ENSSGRP00000041280	Autophagy-related protein 5.	Cysteine protease ATG4B.	0.602
ENSSGRP00000039541	ENSSGRP00000013975	ENSSGRP00000039541	ENSSGRP00000013975	Biogenesis of lysosomal organelles complex-1, subunit 5, muted.	Otoconin 90.	0.607
ENSSGRP00000042478	LOC107553896	ENSSGRP00000042478	ENSSGRP00000050175	Vang-like protein 2.	Wingless-type MMTV integration site family, member 5.	0.755