(32 nodes) Formation of anatomical boundary network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000084565	E3 ubiquitin-protein ligase mib1-like. (1027 aa)
	ENSSGRP00000089762	Si:dkey-222b8.1. (527 aa)
	ENSSGRP00000092768	E3 ubiquitin-protein ligase mib1 isoform X1. (1003 aa)
	ENSSGRP00000092780	annotation not available (77 aa)
	LOC107554690	Mediator of RNA polymerase II transcription subunit 12. (2073 aa)
	ENSSGRP00000098989	Mothers against decapentaplegic homolog 4-like. (169 aa)
	LOC107561807	Ephrin type-A receptor 4. (963 aa)
	LOC107555860	Ephrin-B2a-like. (333 aa)
	ENSSGRP00000104891	Mothers against decapentaplegic homolog 4-like. (571 aa)
	LOC107559658	Mothers against decapentaplegic homolog 4 isoform X1. (550 aa)
	ENSSGRP00000109068	Transcription factor MafB-like. (406 aa)
	ENSSGRP00000076363	Mothers against decapentaplegic homolog 4-like isoform X1. (573 aa)
	LOC107561671	Early growth response protein 2b-like. (389 aa)
	ENSSGRP00000083615	Fibroblast growth factor receptor 3-like. (414 aa)
	ENSSGRP00000089604	annotation not available (101 aa)
	LOC107583108	Ephrin type-A receptor 4-like isoform X1. (995 aa)
	ENSSGRP00000010396	SMAD family member 4b. (464 aa)
	LOC107585743	Ephrin type-A receptor 4-like. (988 aa)
	LOC107596611	Early growth response protein 2b-like. (414 aa)
	LOC107596614	Early growth response protein 2b-like. (414 aa)
	ENSSGRP00000022575	SMAD family member 4a. (499 aa)
	LOC107565280	Ephrin-B2a-like. (225 aa)
	ENSSGRP00000029869	SMAD family member 4b. (484 aa)
	ENSSGRP00000035591	Ephrin-B2a-like. (335 aa)
	ENSSGRP00000040199	Mediator complex subunit 12. (1828 aa)
	LOC107586831	Early growth response protein 2b-like. (387 aa)
	LOC107550085	Mothers against decapentaplegic homolog 4-like isoform X1. (571 aa)
	ENSSGRP00000048514	Ephrin type-A receptor 4-like. (986 aa)
	ENSSGRP00000057368	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (363 aa)
	LOC107563180	Ephrin-B2a. (333 aa)
	ENSSGRP00000061297	Transcription factor MAFB. (347 aa)
	LOC107593522	Early growth response protein 2b. (414 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000035591	ENSSGRP00000048514	ENSSGRP00000035591	ENSSGRP00000048514	Ephrin-B2a-like.	Ephrin type-A receptor 4-like.	0.645
ENSSGRP00000035591	ENSSGRP00000083615	ENSSGRP00000035591	ENSSGRP00000083615	Ephrin-B2a-like.	Fibroblast growth factor receptor 3-like.	0.738
ENSSGRP00000035591	LOC107561807	ENSSGRP00000035591	ENSSGRP00000100807	Ephrin-B2a-like.	Ephrin type-A receptor 4.	0.738
ENSSGRP00000035591	LOC107583108	ENSSGRP00000035591	ENSSGRP00000008573	Ephrin-B2a-like.	Ephrin type-A receptor 4-like isoform X1.	0.738
ENSSGRP00000035591	LOC107585743	ENSSGRP00000035591	ENSSGRP00000011051	Ephrin-B2a-like.	Ephrin type-A receptor 4-like.	0.645
ENSSGRP00000048514	ENSSGRP00000035591	ENSSGRP00000048514	ENSSGRP00000035591	Ephrin type-A receptor 4-like.	Ephrin-B2a-like.	0.645
ENSSGRP00000048514	LOC107555860	ENSSGRP00000048514	ENSSGRP00000102787	Ephrin type-A receptor 4-like.	Ephrin-B2a-like.	0.652
ENSSGRP00000048514	LOC107563180	ENSSGRP00000048514	ENSSGRP00000057806	Ephrin type-A receptor 4-like.	Ephrin-B2a.	0.652
ENSSGRP00000048514	LOC107565280	ENSSGRP00000048514	ENSSGRP00000027520	Ephrin type-A receptor 4-like.	Ephrin-B2a-like.	0.645
ENSSGRP00000061297	LOC107561671	ENSSGRP00000061297	ENSSGRP00000079246	Transcription factor MAFB.	Early growth response protein 2b-like.	0.445
ENSSGRP00000061297	LOC107586831	ENSSGRP00000061297	ENSSGRP00000044543	Transcription factor MAFB.	Early growth response protein 2b-like.	0.445
ENSSGRP00000061297	LOC107593522	ENSSGRP00000061297	ENSSGRP00000066767	Transcription factor MAFB.	Early growth response protein 2b.	0.474
ENSSGRP00000061297	LOC107596611	ENSSGRP00000061297	ENSSGRP00000014433	Transcription factor MAFB.	Early growth response protein 2b-like.	0.474
ENSSGRP00000061297	LOC107596614	ENSSGRP00000061297	ENSSGRP00000014436	Transcription factor MAFB.	Early growth response protein 2b-like.	0.474
ENSSGRP00000083615	ENSSGRP00000035591	ENSSGRP00000083615	ENSSGRP00000035591	Fibroblast growth factor receptor 3-like.	Ephrin-B2a-like.	0.738
ENSSGRP00000083615	LOC107555860	ENSSGRP00000083615	ENSSGRP00000102787	Fibroblast growth factor receptor 3-like.	Ephrin-B2a-like.	0.739
ENSSGRP00000083615	LOC107563180	ENSSGRP00000083615	ENSSGRP00000057806	Fibroblast growth factor receptor 3-like.	Ephrin-B2a.	0.739
ENSSGRP00000083615	LOC107565280	ENSSGRP00000083615	ENSSGRP00000027520	Fibroblast growth factor receptor 3-like.	Ephrin-B2a-like.	0.738
ENSSGRP00000109068	LOC107561671	ENSSGRP00000109068	ENSSGRP00000079246	Transcription factor MafB-like.	Early growth response protein 2b-like.	0.445
ENSSGRP00000109068	LOC107586831	ENSSGRP00000109068	ENSSGRP00000044543	Transcription factor MafB-like.	Early growth response protein 2b-like.	0.445