(10 nodes) Stem cell fate specification network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000070667	Transcription factor SOX7/8/10/18 (SOX group E/F). (296 aa)
	ENSSGRP00000010363	annotation not available (103 aa)
	ENSSGRP00000016636	SRY-box transcription factor 17. (297 aa)
	LOC107568470	Secreted frizzled-related protein 2-like. (308 aa)
	ENSSGRP00000038800	Wingless-type MMTV integration site family, member 8a. (346 aa)
	LOC107602559	Wingless-type MMTV integration site family, member 8. (354 aa)
	Sfrp2	Secreted frizzled-related protein 2. (308 aa)
	LOC107568688	Wingless-type MMTV integration site family, member 8. (336 aa)
	LOC107568687	Wingless-type MMTV integration site family, member 8. (359 aa)
	LOC107551552	Transcription factor SOX7/8/10/18 (SOX group E/F). (439 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000038800	LOC107568470	ENSSGRP00000038800	ENSSGRP00000022680	Wingless-type MMTV integration site family, member 8a.	Secreted frizzled-related protein 2-like.	0.447
ENSSGRP00000038800	Sfrp2	ENSSGRP00000038800	ENSSGRP00000053156	Wingless-type MMTV integration site family, member 8a.	Secreted frizzled-related protein 2.	0.501
LOC107568470	ENSSGRP00000038800	ENSSGRP00000022680	ENSSGRP00000038800	Secreted frizzled-related protein 2-like.	Wingless-type MMTV integration site family, member 8a.	0.447
LOC107568470	LOC107568687	ENSSGRP00000022680	ENSSGRP00000075767	Secreted frizzled-related protein 2-like.	Wingless-type MMTV integration site family, member 8.	0.798
LOC107568470	LOC107568688	ENSSGRP00000022680	ENSSGRP00000075764	Secreted frizzled-related protein 2-like.	Wingless-type MMTV integration site family, member 8.	0.840
LOC107568470	LOC107602559	ENSSGRP00000022680	ENSSGRP00000038802	Secreted frizzled-related protein 2-like.	Wingless-type MMTV integration site family, member 8.	0.798
LOC107568687	LOC107568470	ENSSGRP00000075767	ENSSGRP00000022680	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2-like.	0.798
LOC107568687	Sfrp2	ENSSGRP00000075767	ENSSGRP00000053156	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2.	0.818
LOC107568688	LOC107568470	ENSSGRP00000075764	ENSSGRP00000022680	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2-like.	0.840
LOC107568688	Sfrp2	ENSSGRP00000075764	ENSSGRP00000053156	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2.	0.818
LOC107602559	LOC107568470	ENSSGRP00000038802	ENSSGRP00000022680	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2-like.	0.798
LOC107602559	Sfrp2	ENSSGRP00000038802	ENSSGRP00000053156	Wingless-type MMTV integration site family, member 8.	Secreted frizzled-related protein 2.	0.818
Sfrp2	ENSSGRP00000038800	ENSSGRP00000053156	ENSSGRP00000038800	Secreted frizzled-related protein 2.	Wingless-type MMTV integration site family, member 8a.	0.501
Sfrp2	LOC107568687	ENSSGRP00000053156	ENSSGRP00000075767	Secreted frizzled-related protein 2.	Wingless-type MMTV integration site family, member 8.	0.818
Sfrp2	LOC107568688	ENSSGRP00000053156	ENSSGRP00000075764	Secreted frizzled-related protein 2.	Wingless-type MMTV integration site family, member 8.	0.818
Sfrp2	LOC107602559	ENSSGRP00000053156	ENSSGRP00000038802	Secreted frizzled-related protein 2.	Wingless-type MMTV integration site family, member 8.	0.818