(20 nodes) Peripheral nervous system neuron axonogenesis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000085714	Dihydropyrimidinase-related protein 3. (529 aa)
	LOC107553605	Survival motor neuron protein 1-like isoform X1. (280 aa)
	ENSSGRP00000096489	Semaphorin-3D-like. (291 aa)
	ENSSGRP00000096493	Si:dkey-49n23.1. (374 aa)
	ENSSGRP00000100916	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D. (291 aa)
	ENSSGRP00000100921	Semaphorin-3D-like. (533 aa)
	ENSSGRP00000106053	Survival motor neuron protein 1-like. (267 aa)
	ENSSGRP00000109007	Notch receptor 1b. (2380 aa)
	Notch1	Neurogenic locus notch homolog protein 1. (2140 aa)
	ENSSGRP00000000292	Dihydropyrimidinase like 3. (513 aa)
	ENSSGRP00000005304	Neurogenic locus notch homolog protein 1-like. (182 aa)
	ENSSGRP00000005459	Neurogenic locus notch homolog protein 1-like. (248 aa)
	ENSSGRP00000009164	Insulin gene enhancer protein isl-1-like. (140 aa)
	ENSSGRP00000017318	Insulin gene enhancer protein ISL-2A-like isoform X1. (286 aa)
	LOC107559401	Semaphorin-3D isoform X1. (767 aa)
	ENSSGRP00000048421	Neurogenic locus notch homolog protein 1. (2408 aa)
	ENSSGRP00000052561	Islet1, like. (177 aa)
	LOC107602011	Insulin gene enhancer protein isl-1-like isoform X1. (349 aa)
	ENSSGRP00000068938	Neurogenic locus notch homolog protein 1-like isoform X1. (2440 aa)
	LOC107599171	Insulin gene enhancer protein isl-1 isoform X1. (349 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000292	ENSSGRP00000100916	ENSSGRP00000000292	ENSSGRP00000100916	Dihydropyrimidinase like 3.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D.	0.526
ENSSGRP00000000292	ENSSGRP00000100921	ENSSGRP00000000292	ENSSGRP00000100921	Dihydropyrimidinase like 3.	Semaphorin-3D-like.	0.526
ENSSGRP00000000292	LOC107559401	ENSSGRP00000000292	ENSSGRP00000030027	Dihydropyrimidinase like 3.	Semaphorin-3D isoform X1.	0.526
ENSSGRP00000085714	ENSSGRP00000100916	ENSSGRP00000085714	ENSSGRP00000100916	Dihydropyrimidinase-related protein 3.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D.	0.434
ENSSGRP00000085714	ENSSGRP00000100921	ENSSGRP00000085714	ENSSGRP00000100921	Dihydropyrimidinase-related protein 3.	Semaphorin-3D-like.	0.434
ENSSGRP00000085714	LOC107559401	ENSSGRP00000085714	ENSSGRP00000030027	Dihydropyrimidinase-related protein 3.	Semaphorin-3D isoform X1.	0.434
ENSSGRP00000100916	ENSSGRP00000000292	ENSSGRP00000100916	ENSSGRP00000000292	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D.	Dihydropyrimidinase like 3.	0.526
ENSSGRP00000100916	ENSSGRP00000085714	ENSSGRP00000100916	ENSSGRP00000085714	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D.	Dihydropyrimidinase-related protein 3.	0.434
ENSSGRP00000100921	ENSSGRP00000000292	ENSSGRP00000100921	ENSSGRP00000000292	Semaphorin-3D-like.	Dihydropyrimidinase like 3.	0.526
ENSSGRP00000100921	ENSSGRP00000085714	ENSSGRP00000100921	ENSSGRP00000085714	Semaphorin-3D-like.	Dihydropyrimidinase-related protein 3.	0.434
ENSSGRP00000106053	LOC107553605	ENSSGRP00000106053	ENSSGRP00000090532	Survival motor neuron protein 1-like.	Survival motor neuron protein 1-like isoform X1.	0.900
LOC107553605	ENSSGRP00000106053	ENSSGRP00000090532	ENSSGRP00000106053	Survival motor neuron protein 1-like isoform X1.	Survival motor neuron protein 1-like.	0.900
LOC107559401	ENSSGRP00000000292	ENSSGRP00000030027	ENSSGRP00000000292	Semaphorin-3D isoform X1.	Dihydropyrimidinase like 3.	0.526
LOC107559401	ENSSGRP00000085714	ENSSGRP00000030027	ENSSGRP00000085714	Semaphorin-3D isoform X1.	Dihydropyrimidinase-related protein 3.	0.434