(38 nodes) Pharyngeal system development network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000019439	Homeobox protein BarH-like 1. (174 aa)
	ENSSGRP00000009509	annotation not available (255 aa)
	LOC107559691	Endothelin-1-like. (226 aa)
	bmpr2	Bone morphogenetic protein receptor type-2 isoform X1. (1064 aa)
	dlx2	Homeobox protein DLX-2. (271 aa)
	LOC107592120	Double-strand-break repair protein rad21 homolog isoform X1. (635 aa)
	LOC107588237	Homeobox protein Dlx2a. (274 aa)
	ENSSGRP00000100208	Double-strand-break repair protein rad21 homolog. (646 aa)
	LOC107574235	BTB/POZ domain-containing protein kctd15-like isoform X1. (265 aa)
	tbx1	T-box transcription factor TBX1 isoform X1. (519 aa)
	LOC107553134	Homeobox protein Nkx-2.5-like. (275 aa)
	KCTD15	BTB/POZ domain-containing protein kctd15 isoform X1. (265 aa)
	LOC107551767	Endothelin-1-like. (189 aa)
	LOC107591962	Double-strand-break repair protein rad21 homolog isoform X1. (637 aa)
	LOC107559447	Homeobox protein Nkx-2.5-like. (273 aa)
	LOC107559446	Homeobox protein Nkx-3.1-like. (185 aa)
	LOC107588741	Fibroblast growth factor 8-like. (210 aa)
	ENSSGRP00000072990	annotation not available (183 aa)
	LOC107593012	Bone morphogenetic protein receptor type-2-like. (1085 aa)
	LOC107550651	Endothelin-1 receptor-like isoform X1. (422 aa)
	ENSSGRP00000061257	Endothelin receptor type Ab. (353 aa)
	ENSSGRP00000053827	Fibroblast growth factor 8a. (206 aa)
	ENSSGRP00000036904	T-box transcription factor 1. (434 aa)
	ENSSGRP00000036219	Mothers against decapentaplegic homolog 1-like. (181 aa)
	ENSSGRP00000036217	annotation not available (113 aa)
	LOC107593976	Retinoic acid receptor gamma-A isoform X1. (506 aa)
	LOC107584759	Bone morphogenetic protein receptor type-2-like. (1008 aa)
	barx1	Homeobox protein BarH-like 1. (248 aa)
	LOC107555441	Bone morphogenetic protein receptor type-2-like isoform X1. (1018 aa)
	ENSSGRP00000027136	Double-strand-break repair protein rad21-like protein 1. (453 aa)
	LOC107598731	Endothelin receptor type A. (422 aa)
	LOC107563595	Mothers against decapentaplegic homolog 5 isoform X1. (464 aa)
	LOC107554942	BTB/POZ domain-containing protein kctd15-like isoform X1. (265 aa)
	ENSSGRP00000046429	Double-strand-break repair protein rad21 homolog. (634 aa)
	ENSSGRP00000044392	Retinoic acid receptor gamma-A-like. (83 aa)
	LOC107598375	Homeobox protein Nkx-2.5-like. (315 aa)
	LOC107567477	Homeobox protein Nkx-2.5-like. (309 aa)
	ENSSGRP00000038634	Endothelin receptor type Ab. (341 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000019439	ENSSGRP00000053827	ENSSGRP00000019439	ENSSGRP00000053827	Homeobox protein BarH-like 1.	Fibroblast growth factor 8a.	0.446
ENSSGRP00000019439	LOC107588741	ENSSGRP00000019439	ENSSGRP00000085674	Homeobox protein BarH-like 1.	Fibroblast growth factor 8-like.	0.446
ENSSGRP00000036217	ENSSGRP00000036219	ENSSGRP00000036217	ENSSGRP00000036219	annotation not available	Mothers against decapentaplegic homolog 1-like.	0.498
ENSSGRP00000036217	LOC107555441	ENSSGRP00000036217	ENSSGRP00000030898	annotation not available	Bone morphogenetic protein receptor type-2-like isoform X1.	0.580
ENSSGRP00000036217	LOC107584759	ENSSGRP00000036217	ENSSGRP00000031898	annotation not available	Bone morphogenetic protein receptor type-2-like.	0.580
ENSSGRP00000036217	LOC107593012	ENSSGRP00000036217	ENSSGRP00000066173	annotation not available	Bone morphogenetic protein receptor type-2-like.	0.580
ENSSGRP00000036217	bmpr2	ENSSGRP00000036217	ENSSGRP00000110397	annotation not available	Bone morphogenetic protein receptor type-2 isoform X1.	0.580
ENSSGRP00000036219	ENSSGRP00000036217	ENSSGRP00000036219	ENSSGRP00000036217	Mothers against decapentaplegic homolog 1-like.	annotation not available	0.498
ENSSGRP00000036219	ENSSGRP00000044392	ENSSGRP00000036219	ENSSGRP00000044392	Mothers against decapentaplegic homolog 1-like.	Retinoic acid receptor gamma-A-like.	0.454
ENSSGRP00000036219	LOC107555441	ENSSGRP00000036219	ENSSGRP00000030898	Mothers against decapentaplegic homolog 1-like.	Bone morphogenetic protein receptor type-2-like isoform X1.	0.580
ENSSGRP00000036219	LOC107584759	ENSSGRP00000036219	ENSSGRP00000031898	Mothers against decapentaplegic homolog 1-like.	Bone morphogenetic protein receptor type-2-like.	0.580
ENSSGRP00000036219	LOC107593012	ENSSGRP00000036219	ENSSGRP00000066173	Mothers against decapentaplegic homolog 1-like.	Bone morphogenetic protein receptor type-2-like.	0.580
ENSSGRP00000036219	bmpr2	ENSSGRP00000036219	ENSSGRP00000110397	Mothers against decapentaplegic homolog 1-like.	Bone morphogenetic protein receptor type-2 isoform X1.	0.580
ENSSGRP00000036904	LOC107567477	ENSSGRP00000036904	ENSSGRP00000041521	T-box transcription factor 1.	Homeobox protein Nkx-2.5-like.	0.616
ENSSGRP00000036904	LOC107598375	ENSSGRP00000036904	ENSSGRP00000041746	T-box transcription factor 1.	Homeobox protein Nkx-2.5-like.	0.616
ENSSGRP00000038634	LOC107551767	ENSSGRP00000038634	ENSSGRP00000088481	Endothelin receptor type Ab.	Endothelin-1-like.	0.970
ENSSGRP00000038634	LOC107559691	ENSSGRP00000038634	ENSSGRP00000008726	Endothelin receptor type Ab.	Endothelin-1-like.	0.970
ENSSGRP00000044392	ENSSGRP00000036219	ENSSGRP00000044392	ENSSGRP00000036219	Retinoic acid receptor gamma-A-like.	Mothers against decapentaplegic homolog 1-like.	0.454
ENSSGRP00000053827	ENSSGRP00000019439	ENSSGRP00000053827	ENSSGRP00000019439	Fibroblast growth factor 8a.	Homeobox protein BarH-like 1.	0.446
ENSSGRP00000053827	LOC107551767	ENSSGRP00000053827	ENSSGRP00000088481	Fibroblast growth factor 8a.	Endothelin-1-like.	0.576