(51 nodes) Long-term synaptic potentiation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnr	Tenascin-R isoform X1. (1364 aa)
	ENSSGRP00000016406	Leucine-rich repeat transmembrane neuronal protein 1-like. (522 aa)
	grin2a	Glutamate receptor ionotropic, NMDA 2A. (1459 aa)
	ENSSGRP00000016611	annotation not available (393 aa)
	ENSSGRP00000016613	Sodium/potassium/calcium exchanger 2-like. (923 aa)
	ENSSGRP00000022322	Glutamate receptor ionotropic, NMDA 2C-like. (1167 aa)
	ENSSGRP00000023251	annotation not available (93 aa)
	LOC107598824	Neuroplastin-like isoform X1. (393 aa)
	LOC107564541	Glutamate receptor ionotropic, NMDA 2A-like. (1446 aa)
	ENSSGRP00000026358	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1765 aa)
	ENSSGRP00000028039	Sodium/potassium/calcium exchanger 2-like. (320 aa)
	LOC107552216	Methyl-CpG-binding protein 2-like. (541 aa)
	ENSSGRP00000037352	annotation not available (159 aa)
	ENSSGRP00000037354	annotation not available (160 aa)
	LOC107559244	Glutamate receptor ionotropic, NMDA 2C-like. (1400 aa)
	ENSSGRP00000043014	SH3 and multiple ankyrin repeat domains protein 2-like. (1339 aa)
	PRRT1	Proline-rich transmembrane protein 1-like. (100 aa)
	ENSSGRP00000046242	Glutamate receptor ionotropic, NMDA 2D-like. (828 aa)
	grin2c	Glutamate receptor ionotropic, NMDA 2C. (1340 aa)
	GRIN2B	Glutamate receptor ionotropic, NMDA 2B-like. (1501 aa)
	LOC107553363	Neuroplastin-like. (397 aa)
	LOC107558841	Glia-derived nexin-like. (512 aa)
	ENSSGRP00000051622	Glutamate receptor ionotropic, NMDA 2B-like isoform X1. (1754 aa)
	ENSSGRP00000056803	Glutamate receptor ionotropic, NMDA 2B-like. (1546 aa)
	LOC107583763	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 1. (719 aa)
	ENSSGRP00000061520	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a. (947 aa)
	ENSSGRP00000062565	SH3 and multiple ankyrin repeat domains protein 2-like. (1794 aa)
	LOC107558359	tenascin-R-like. (1323 aa)
	LOC107559999	Synaptotagmin-12-like. (420 aa)
	LOC107584876	Methyl-CpG-binding protein 2-like isoform X1. (540 aa)
	LOC107573158	Synaptotagmin-12-like isoform X1. (420 aa)
	ENSSGRP00000077971	Leucine-rich repeat transmembrane neuronal protein 1-like. (542 aa)
	ENSSGRP00000078090	Nuclear factor of activated T cells 4. (710 aa)
	ENSSGRP00000079370	Glutamate receptor ionotropic, NMDA 2B-like isoform X1. (1738 aa)
	ENSSGRP00000079889	SH3 and multiple ankyrin repeat domains protein 2-like isoform X1. (1758 aa)
	ENSSGRP00000081611	annotation not available (1993 aa)
	ENSSGRP00000082221	Glutamate receptor ionotropic, NMDA 2C-like. (1314 aa)
	ENSSGRP00000089224	Teashirt homolog 3-like. (1123 aa)
	LOC107573733	Neuroplastin-like. (393 aa)
	ENSSGRP00000094512	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1414 aa)
	ENSSGRP00000095209	Sodium/potassium/calcium exchanger 2-like. (227 aa)
	ENSSGRP00000095884	Neuroplastin-like isoform X1. (378 aa)
	Lrrtm2	Leucine-rich repeat transmembrane neuronal protein 1/2. (542 aa)
	ENSSGRP00000103881	annotation not available (541 aa)
	LOC107596980	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 1. (719 aa)
	ENSSGRP00000109569	Glutamate receptor ionotropic, NMDA 2D-like. (954 aa)
	LOC107590489	Teashirt homolog 2-like. (713 aa)
	ENSSGRP00000000793	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 2. (227 aa)
	ENSSGRP00000003260	SH3 and multiple ankyrin repeat domains protein 2-like. (957 aa)
	ENSSGRP00000012055	Nuclear factor of activated T-cells, cytoplasmic 4-like isoform X1. (729 aa)
	LOC107585761	Glia-derived nexin-like. (395 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003260	ENSSGRP00000103881	ENSSGRP00000003260	ENSSGRP00000103881	SH3 and multiple ankyrin repeat domains protein 2-like.	annotation not available	0.410
ENSSGRP00000003260	Lrrtm2	ENSSGRP00000003260	ENSSGRP00000097098	SH3 and multiple ankyrin repeat domains protein 2-like.	Leucine-rich repeat transmembrane neuronal protein 1/2.	0.410
ENSSGRP00000023251	ENSSGRP00000103881	ENSSGRP00000023251	ENSSGRP00000103881	annotation not available	annotation not available	0.421
ENSSGRP00000023251	Lrrtm2	ENSSGRP00000023251	ENSSGRP00000097098	annotation not available	Leucine-rich repeat transmembrane neuronal protein 1/2.	0.421
ENSSGRP00000043014	ENSSGRP00000103881	ENSSGRP00000043014	ENSSGRP00000103881	SH3 and multiple ankyrin repeat domains protein 2-like.	annotation not available	0.410
ENSSGRP00000043014	Lrrtm2	ENSSGRP00000043014	ENSSGRP00000097098	SH3 and multiple ankyrin repeat domains protein 2-like.	Leucine-rich repeat transmembrane neuronal protein 1/2.	0.410
ENSSGRP00000051622	LOC107552216	ENSSGRP00000051622	ENSSGRP00000036940	Glutamate receptor ionotropic, NMDA 2B-like isoform X1.	Methyl-CpG-binding protein 2-like.	0.437
ENSSGRP00000051622	LOC107584876	ENSSGRP00000051622	ENSSGRP00000064983	Glutamate receptor ionotropic, NMDA 2B-like isoform X1.	Methyl-CpG-binding protein 2-like isoform X1.	0.437
ENSSGRP00000056803	LOC107552216	ENSSGRP00000056803	ENSSGRP00000036940	Glutamate receptor ionotropic, NMDA 2B-like.	Methyl-CpG-binding protein 2-like.	0.437
ENSSGRP00000056803	LOC107584876	ENSSGRP00000056803	ENSSGRP00000064983	Glutamate receptor ionotropic, NMDA 2B-like.	Methyl-CpG-binding protein 2-like isoform X1.	0.437
ENSSGRP00000079370	LOC107552216	ENSSGRP00000079370	ENSSGRP00000036940	Glutamate receptor ionotropic, NMDA 2B-like isoform X1.	Methyl-CpG-binding protein 2-like.	0.437
ENSSGRP00000079370	LOC107584876	ENSSGRP00000079370	ENSSGRP00000064983	Glutamate receptor ionotropic, NMDA 2B-like isoform X1.	Methyl-CpG-binding protein 2-like isoform X1.	0.437
ENSSGRP00000103881	ENSSGRP00000003260	ENSSGRP00000103881	ENSSGRP00000003260	annotation not available	SH3 and multiple ankyrin repeat domains protein 2-like.	0.410
ENSSGRP00000103881	ENSSGRP00000023251	ENSSGRP00000103881	ENSSGRP00000023251	annotation not available	annotation not available	0.421
ENSSGRP00000103881	ENSSGRP00000043014	ENSSGRP00000103881	ENSSGRP00000043014	annotation not available	SH3 and multiple ankyrin repeat domains protein 2-like.	0.410
ENSSGRP00000103881	PRRT1	ENSSGRP00000103881	ENSSGRP00000046217	annotation not available	Proline-rich transmembrane protein 1-like.	0.421
GRIN2B	LOC107552216	ENSSGRP00000047899	ENSSGRP00000036940	Glutamate receptor ionotropic, NMDA 2B-like.	Methyl-CpG-binding protein 2-like.	0.437
GRIN2B	LOC107584876	ENSSGRP00000047899	ENSSGRP00000064983	Glutamate receptor ionotropic, NMDA 2B-like.	Methyl-CpG-binding protein 2-like isoform X1.	0.437
LOC107552216	ENSSGRP00000051622	ENSSGRP00000036940	ENSSGRP00000051622	Methyl-CpG-binding protein 2-like.	Glutamate receptor ionotropic, NMDA 2B-like isoform X1.	0.437
LOC107552216	ENSSGRP00000056803	ENSSGRP00000036940	ENSSGRP00000056803	Methyl-CpG-binding protein 2-like.	Glutamate receptor ionotropic, NMDA 2B-like.	0.437