(34 nodes) phosphatidylinositol-4-phosphate binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005601	Sorting nexin-24-like. (146 aa)
	LOC107555180	Arfaptin-2-like isoform X1. (408 aa)
	Sestd1	SEC14 domain and spectrin repeat-containing protein 1. (639 aa)
	ENSSGRP00000071561	annotation not available (100 aa)
	LOC107559011	Arfaptin-2-like isoform X1. (410 aa)
	ENSSGRP00000067046	Golgi phosphoprotein 3-like. (282 aa)
	LOC107557232	Arfaptin-2-like isoform X1. (376 aa)
	LOC107601624	SEC14 domain and spectrin repeat-containing protein 1. (713 aa)
	ENSSGRP00000053157	ADP-ribosylation factor interacting protein 1 (arfaptin 1). (295 aa)
	LOC107562594	Golgi phosphoprotein 3-like. (319 aa)
	LOC107602021	Golgi phosphoprotein 3. (295 aa)
	snx24	Sorting nexin-22/24. (171 aa)
	LOC107568539	Collagen type IV alpha-3-binding protein isoform X1. (641 aa)
	LOC107587519	Collagen type IV alpha-3-binding protein isoform X1. (620 aa)
	LOC107555488	Collagen type IV alpha-3-binding protein-like isoform X1. (622 aa)
	ENSSGRP00000036531	Oxysterol binding protein-like 5. (754 aa)
	LOC107556426	Pleckstrin homology domain-containing family A member 3-like isoform X1. (298 aa)
	LOC107587234	Arfaptin-2-like. (391 aa)
	ENSSGRP00000024412	ADP-ribosylation factor interacting protein 1 (arfaptin 1). (476 aa)
	LOC107595534	Golgi phosphoprotein 3-like isoform X1. (308 aa)
	LOC107575121	Golgi phosphoprotein 3-like. (279 aa)
	ENSSGRP00000008585	Golgi phosphoprotein 3-like. (103 aa)
	ENSSGRP00000111768	Pleckstrin homology domain containing, family A member 5. (1012 aa)
	OSBPL8-2	Oxysterol-binding protein-related protein 8 isoform X1. (882 aa)
	LOC107582034	Pleckstrin homology domain-containing family A member 3-like isoform X1. (295 aa)
	LOC107552603	Golgi phosphoprotein 3-like. (295 aa)
	OSBPL8	Oxysterol-binding protein-related protein 8-like isoform X1. (882 aa)
	ENSSGRP00000102561	Rubicon like autophagy enhancer. (418 aa)
	ENSSGRP00000094955	Collagen type IV alpha-3-binding protein-like. (561 aa)
	ENSSGRP00000084696	annotation not available (149 aa)
	ENSSGRP00000084695	Pleckstrin homology domain containing, family A member 5. (880 aa)
	SAP30L	Histone deacetylase complex subunit SAP30L-like. (156 aa)
	LOC107549292	Oxysterol-binding protein-related protein 5-like. (865 aa)
	ENSSGRP00000079712	annotation not available (155 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000084695	LOC107556426	ENSSGRP00000084695	ENSSGRP00000034750	Pleckstrin homology domain containing, family A member 5.	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
ENSSGRP00000084695	LOC107582034	ENSSGRP00000084695	ENSSGRP00000110839	Pleckstrin homology domain containing, family A member 5.	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
ENSSGRP00000084696	LOC107556426	ENSSGRP00000084696	ENSSGRP00000034750	annotation not available	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
ENSSGRP00000084696	LOC107582034	ENSSGRP00000084696	ENSSGRP00000110839	annotation not available	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
ENSSGRP00000111768	LOC107556426	ENSSGRP00000111768	ENSSGRP00000034750	Pleckstrin homology domain containing, family A member 5.	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
ENSSGRP00000111768	LOC107582034	ENSSGRP00000111768	ENSSGRP00000110839	Pleckstrin homology domain containing, family A member 5.	Pleckstrin homology domain-containing family A member 3-like isoform X1.	0.448
LOC107556426	ENSSGRP00000084695	ENSSGRP00000034750	ENSSGRP00000084695	Pleckstrin homology domain-containing family A member 3-like isoform X1.	Pleckstrin homology domain containing, family A member 5.	0.448
LOC107556426	ENSSGRP00000084696	ENSSGRP00000034750	ENSSGRP00000084696	Pleckstrin homology domain-containing family A member 3-like isoform X1.	annotation not available	0.448
LOC107556426	ENSSGRP00000111768	ENSSGRP00000034750	ENSSGRP00000111768	Pleckstrin homology domain-containing family A member 3-like isoform X1.	Pleckstrin homology domain containing, family A member 5.	0.448
LOC107582034	ENSSGRP00000084695	ENSSGRP00000110839	ENSSGRP00000084695	Pleckstrin homology domain-containing family A member 3-like isoform X1.	Pleckstrin homology domain containing, family A member 5.	0.448
LOC107582034	ENSSGRP00000084696	ENSSGRP00000110839	ENSSGRP00000084696	Pleckstrin homology domain-containing family A member 3-like isoform X1.	annotation not available	0.448
LOC107582034	ENSSGRP00000111768	ENSSGRP00000110839	ENSSGRP00000111768	Pleckstrin homology domain-containing family A member 3-like isoform X1.	Pleckstrin homology domain containing, family A member 5.	0.448