(14 nodes) Renal sodium ion absorption network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107551767	Endothelin-1-like. (189 aa)
	LOC107566659	Endothelin B receptor-like. (417 aa)
	LOC107550651	Endothelin-1 receptor-like isoform X1. (422 aa)
	ENSSGRP00000061257	Endothelin receptor type Ab. (353 aa)
	ENSSGRP00000041718	Kelch-like protein 2/3. (618 aa)
	ENSSGRP00000041459	Kelch-like family member 3. (525 aa)
	ENSSGRP00000038935	Potassium voltage-gated channel KQT-like subfamily member 1. (646 aa)
	ENSSGRP00000038634	Endothelin receptor type Ab. (341 aa)
	ENSSGRP00000015007	Potassium voltage-gated channel KQT-like subfamily member 1. (496 aa)
	ENSSGRP00000037655	Endothelin receptor type Bb. (349 aa)
	ENSSGRP00000007757	annotation not available (58 aa)
	LOC107559691	Endothelin-1-like. (226 aa)
	LOC107598731	Endothelin receptor type A. (422 aa)
	ENSSGRP00000102136	Potassium voltage-gated channel KQT-like subfamily member 1. (652 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007757	ENSSGRP00000038634	ENSSGRP00000007757	ENSSGRP00000038634	annotation not available	Endothelin receptor type Ab.	0.689
ENSSGRP00000007757	ENSSGRP00000061257	ENSSGRP00000007757	ENSSGRP00000061257	annotation not available	Endothelin receptor type Ab.	0.690
ENSSGRP00000007757	LOC107550651	ENSSGRP00000007757	ENSSGRP00000062849	annotation not available	Endothelin-1 receptor-like isoform X1.	0.689
ENSSGRP00000007757	LOC107551767	ENSSGRP00000007757	ENSSGRP00000088481	annotation not available	Endothelin-1-like.	0.979
ENSSGRP00000007757	LOC107559691	ENSSGRP00000007757	ENSSGRP00000008726	annotation not available	Endothelin-1-like.	0.979
ENSSGRP00000007757	LOC107598731	ENSSGRP00000007757	ENSSGRP00000013953	annotation not available	Endothelin receptor type A.	0.688
ENSSGRP00000015007	ENSSGRP00000038935	ENSSGRP00000015007	ENSSGRP00000038935	Potassium voltage-gated channel KQT-like subfamily member 1.	Potassium voltage-gated channel KQT-like subfamily member 1.	0.903
ENSSGRP00000015007	ENSSGRP00000102136	ENSSGRP00000015007	ENSSGRP00000102136	Potassium voltage-gated channel KQT-like subfamily member 1.	Potassium voltage-gated channel KQT-like subfamily member 1.	0.902
ENSSGRP00000037655	ENSSGRP00000038634	ENSSGRP00000037655	ENSSGRP00000038634	Endothelin receptor type Bb.	Endothelin receptor type Ab.	0.700
ENSSGRP00000037655	ENSSGRP00000061257	ENSSGRP00000037655	ENSSGRP00000061257	Endothelin receptor type Bb.	Endothelin receptor type Ab.	0.700
ENSSGRP00000037655	LOC107550651	ENSSGRP00000037655	ENSSGRP00000062849	Endothelin receptor type Bb.	Endothelin-1 receptor-like isoform X1.	0.693
ENSSGRP00000037655	LOC107551767	ENSSGRP00000037655	ENSSGRP00000088481	Endothelin receptor type Bb.	Endothelin-1-like.	0.979
ENSSGRP00000037655	LOC107559691	ENSSGRP00000037655	ENSSGRP00000008726	Endothelin receptor type Bb.	Endothelin-1-like.	0.979
ENSSGRP00000037655	LOC107598731	ENSSGRP00000037655	ENSSGRP00000013953	Endothelin receptor type Bb.	Endothelin receptor type A.	0.692
ENSSGRP00000038634	ENSSGRP00000007757	ENSSGRP00000038634	ENSSGRP00000007757	Endothelin receptor type Ab.	annotation not available	0.689
ENSSGRP00000038634	ENSSGRP00000037655	ENSSGRP00000038634	ENSSGRP00000037655	Endothelin receptor type Ab.	Endothelin receptor type Bb.	0.700
ENSSGRP00000038634	LOC107551767	ENSSGRP00000038634	ENSSGRP00000088481	Endothelin receptor type Ab.	Endothelin-1-like.	0.970
ENSSGRP00000038634	LOC107559691	ENSSGRP00000038634	ENSSGRP00000008726	Endothelin receptor type Ab.	Endothelin-1-like.	0.970
ENSSGRP00000038634	LOC107566659	ENSSGRP00000038634	ENSSGRP00000073163	Endothelin receptor type Ab.	Endothelin B receptor-like.	0.687
ENSSGRP00000038935	ENSSGRP00000015007	ENSSGRP00000038935	ENSSGRP00000015007	Potassium voltage-gated channel KQT-like subfamily member 1.	Potassium voltage-gated channel KQT-like subfamily member 1.	0.903