(8 nodes) SOSS complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000102542	Nucleic acid binding protein 1a. (205 aa)
	ENSSGRP00000056591	annotation not available (193 aa)
	LOC107584314	Integrator complex subunit 3. (1027 aa)
	ENSSGRP00000023096	Integrator complex subunit 3-like. (933 aa)
	LOC107571239	SOSS complex subunit C-like isoform X1. (102 aa)
	LOC107558675	SOSS complex subunit C isoform X1. (102 aa)
	LOC107557546	SOSS complex subunit B1-A-like. (192 aa)
	ENSSGRP00000063357	SOSS complex subunit B2-like. (186 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000023096	ENSSGRP00000056591	ENSSGRP00000023096	ENSSGRP00000056591	Integrator complex subunit 3-like.	annotation not available	0.934
ENSSGRP00000023096	ENSSGRP00000063357	ENSSGRP00000023096	ENSSGRP00000063357	Integrator complex subunit 3-like.	SOSS complex subunit B2-like.	0.934
ENSSGRP00000023096	ENSSGRP00000102542	ENSSGRP00000023096	ENSSGRP00000102542	Integrator complex subunit 3-like.	Nucleic acid binding protein 1a.	0.934
ENSSGRP00000023096	LOC107557546	ENSSGRP00000023096	ENSSGRP00000003960	Integrator complex subunit 3-like.	SOSS complex subunit B1-A-like.	0.934
ENSSGRP00000023096	LOC107558675	ENSSGRP00000023096	ENSSGRP00000020938	Integrator complex subunit 3-like.	SOSS complex subunit C isoform X1.	0.986
ENSSGRP00000023096	LOC107571239	ENSSGRP00000023096	ENSSGRP00000021081	Integrator complex subunit 3-like.	SOSS complex subunit C-like isoform X1.	0.986
ENSSGRP00000056591	ENSSGRP00000023096	ENSSGRP00000056591	ENSSGRP00000023096	annotation not available	Integrator complex subunit 3-like.	0.934
ENSSGRP00000056591	LOC107558675	ENSSGRP00000056591	ENSSGRP00000020938	annotation not available	SOSS complex subunit C isoform X1.	0.813
ENSSGRP00000056591	LOC107571239	ENSSGRP00000056591	ENSSGRP00000021081	annotation not available	SOSS complex subunit C-like isoform X1.	0.813
ENSSGRP00000056591	LOC107584314	ENSSGRP00000056591	ENSSGRP00000046989	annotation not available	Integrator complex subunit 3.	0.934
ENSSGRP00000063357	ENSSGRP00000023096	ENSSGRP00000063357	ENSSGRP00000023096	SOSS complex subunit B2-like.	Integrator complex subunit 3-like.	0.934
ENSSGRP00000063357	LOC107558675	ENSSGRP00000063357	ENSSGRP00000020938	SOSS complex subunit B2-like.	SOSS complex subunit C isoform X1.	0.813
ENSSGRP00000063357	LOC107571239	ENSSGRP00000063357	ENSSGRP00000021081	SOSS complex subunit B2-like.	SOSS complex subunit C-like isoform X1.	0.813
ENSSGRP00000063357	LOC107584314	ENSSGRP00000063357	ENSSGRP00000046989	SOSS complex subunit B2-like.	Integrator complex subunit 3.	0.934
ENSSGRP00000102542	ENSSGRP00000023096	ENSSGRP00000102542	ENSSGRP00000023096	Nucleic acid binding protein 1a.	Integrator complex subunit 3-like.	0.934
ENSSGRP00000102542	LOC107558675	ENSSGRP00000102542	ENSSGRP00000020938	Nucleic acid binding protein 1a.	SOSS complex subunit C isoform X1.	0.813
ENSSGRP00000102542	LOC107571239	ENSSGRP00000102542	ENSSGRP00000021081	Nucleic acid binding protein 1a.	SOSS complex subunit C-like isoform X1.	0.813
ENSSGRP00000102542	LOC107584314	ENSSGRP00000102542	ENSSGRP00000046989	Nucleic acid binding protein 1a.	Integrator complex subunit 3.	0.934
LOC107557546	ENSSGRP00000023096	ENSSGRP00000003960	ENSSGRP00000023096	SOSS complex subunit B1-A-like.	Integrator complex subunit 3-like.	0.934
LOC107557546	LOC107558675	ENSSGRP00000003960	ENSSGRP00000020938	SOSS complex subunit B1-A-like.	SOSS complex subunit C isoform X1.	0.813