(13 nodes) Primary miRNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000018198	Serum response factor-like. (238 aa)
	ENSSGRP00000056826	Microprocessor complex subunit DGCR8-like. (567 aa)
	LOC107584442	Serine/arginine-rich splicing factor 3 isoform X1. (194 aa)
	LOC107556767	Ribonuclease 3-like isoform X1. (1292 aa)
	LOC107592303	Microprocessor complex subunit DGCR8-like. (783 aa)
	LOC107568266	Serum response factor-like isoform X1. (285 aa)
	LOC107594292	Putative tRNA pseudouridine synthase Pus10. (518 aa)
	ENSSGRP00000104082	Ribonuclease III. (1146 aa)
	ENSSGRP00000023709	annotation not available (432 aa)
	ENSSGRP00000005048	annotation not available (108 aa)
	LOC107569752	Serine/arginine-rich splicing factor 3-like. (164 aa)
	LOC107551382	Serum response factor-like. (524 aa)
	ENSSGRP00000055176	Serum response factor-like. (238 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000056826	ENSSGRP00000104082	ENSSGRP00000056826	ENSSGRP00000104082	Microprocessor complex subunit DGCR8-like.	Ribonuclease III.	0.994
ENSSGRP00000056826	LOC107556767	ENSSGRP00000056826	ENSSGRP00000070147	Microprocessor complex subunit DGCR8-like.	Ribonuclease 3-like isoform X1.	0.994
ENSSGRP00000104082	ENSSGRP00000056826	ENSSGRP00000104082	ENSSGRP00000056826	Ribonuclease III.	Microprocessor complex subunit DGCR8-like.	0.994
ENSSGRP00000104082	LOC107556767	ENSSGRP00000104082	ENSSGRP00000070147	Ribonuclease III.	Ribonuclease 3-like isoform X1.	0.900
ENSSGRP00000104082	LOC107592303	ENSSGRP00000104082	ENSSGRP00000080521	Ribonuclease III.	Microprocessor complex subunit DGCR8-like.	0.994
LOC107556767	ENSSGRP00000056826	ENSSGRP00000070147	ENSSGRP00000056826	Ribonuclease 3-like isoform X1.	Microprocessor complex subunit DGCR8-like.	0.994
LOC107556767	ENSSGRP00000104082	ENSSGRP00000070147	ENSSGRP00000104082	Ribonuclease 3-like isoform X1.	Ribonuclease III.	0.900
LOC107556767	LOC107592303	ENSSGRP00000070147	ENSSGRP00000080521	Ribonuclease 3-like isoform X1.	Microprocessor complex subunit DGCR8-like.	0.994
LOC107592303	ENSSGRP00000104082	ENSSGRP00000080521	ENSSGRP00000104082	Microprocessor complex subunit DGCR8-like.	Ribonuclease III.	0.994
LOC107592303	LOC107556767	ENSSGRP00000080521	ENSSGRP00000070147	Microprocessor complex subunit DGCR8-like.	Ribonuclease 3-like isoform X1.	0.994