(12 nodes) Gemini of coiled bodies network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000106053	Survival motor neuron protein 1-like. (267 aa)
	ENSSGRP00000106347	Protein NPAT-like. (1273 aa)
	LOC107586681	Gem-associated protein 2-like. (267 aa)
	ENSSGRP00000093460	Plasminogen activator inhibitor 1 RNA-binding protein-like. (217 aa)
	LOC107553605	Survival motor neuron protein 1-like isoform X1. (280 aa)
	gemin7	Gem associated protein 7. (127 aa)
	LOC107585592	Protein NPAT. (1332 aa)
	LOC107589646	Gem-associated protein 2-like. (271 aa)
	zpr1	Zinc finger protein ZPR1. (464 aa)
	LOC107566286	Gem-associated protein 7-like. (109 aa)
	ENSSGRP00000018838	Gem-associated protein 8-like. (175 aa)
	ENSSGRP00000004884	Zinc finger protein ZPR1-like. (157 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004884	LOC107586681	ENSSGRP00000004884	ENSSGRP00000104089	Zinc finger protein ZPR1-like.	Gem-associated protein 2-like.	0.435
ENSSGRP00000018838	ENSSGRP00000106053	ENSSGRP00000018838	ENSSGRP00000106053	Gem-associated protein 8-like.	Survival motor neuron protein 1-like.	0.981
ENSSGRP00000018838	LOC107553605	ENSSGRP00000018838	ENSSGRP00000090532	Gem-associated protein 8-like.	Survival motor neuron protein 1-like isoform X1.	0.981
ENSSGRP00000018838	LOC107566286	ENSSGRP00000018838	ENSSGRP00000029297	Gem-associated protein 8-like.	Gem-associated protein 7-like.	0.998
ENSSGRP00000018838	LOC107586681	ENSSGRP00000018838	ENSSGRP00000104089	Gem-associated protein 8-like.	Gem-associated protein 2-like.	0.996
ENSSGRP00000018838	LOC107589646	ENSSGRP00000018838	ENSSGRP00000062784	Gem-associated protein 8-like.	Gem-associated protein 2-like.	0.949
ENSSGRP00000018838	gemin7	ENSSGRP00000018838	ENSSGRP00000089519	Gem-associated protein 8-like.	Gem associated protein 7.	0.998
ENSSGRP00000093460	ENSSGRP00000106053	ENSSGRP00000093460	ENSSGRP00000106053	Plasminogen activator inhibitor 1 RNA-binding protein-like.	Survival motor neuron protein 1-like.	0.516
ENSSGRP00000093460	LOC107553605	ENSSGRP00000093460	ENSSGRP00000090532	Plasminogen activator inhibitor 1 RNA-binding protein-like.	Survival motor neuron protein 1-like isoform X1.	0.516
ENSSGRP00000106053	ENSSGRP00000018838	ENSSGRP00000106053	ENSSGRP00000018838	Survival motor neuron protein 1-like.	Gem-associated protein 8-like.	0.981
ENSSGRP00000106053	ENSSGRP00000093460	ENSSGRP00000106053	ENSSGRP00000093460	Survival motor neuron protein 1-like.	Plasminogen activator inhibitor 1 RNA-binding protein-like.	0.516
ENSSGRP00000106053	LOC107553605	ENSSGRP00000106053	ENSSGRP00000090532	Survival motor neuron protein 1-like.	Survival motor neuron protein 1-like isoform X1.	0.900
ENSSGRP00000106053	LOC107566286	ENSSGRP00000106053	ENSSGRP00000029297	Survival motor neuron protein 1-like.	Gem-associated protein 7-like.	0.911
ENSSGRP00000106053	LOC107586681	ENSSGRP00000106053	ENSSGRP00000104089	Survival motor neuron protein 1-like.	Gem-associated protein 2-like.	0.994
ENSSGRP00000106053	LOC107589646	ENSSGRP00000106053	ENSSGRP00000062784	Survival motor neuron protein 1-like.	Gem-associated protein 2-like.	0.997
ENSSGRP00000106053	gemin7	ENSSGRP00000106053	ENSSGRP00000089519	Survival motor neuron protein 1-like.	Gem associated protein 7.	0.911
LOC107553605	ENSSGRP00000018838	ENSSGRP00000090532	ENSSGRP00000018838	Survival motor neuron protein 1-like isoform X1.	Gem-associated protein 8-like.	0.981
LOC107553605	ENSSGRP00000093460	ENSSGRP00000090532	ENSSGRP00000093460	Survival motor neuron protein 1-like isoform X1.	Plasminogen activator inhibitor 1 RNA-binding protein-like.	0.516
LOC107553605	ENSSGRP00000106053	ENSSGRP00000090532	ENSSGRP00000106053	Survival motor neuron protein 1-like isoform X1.	Survival motor neuron protein 1-like.	0.900
LOC107553605	LOC107566286	ENSSGRP00000090532	ENSSGRP00000029297	Survival motor neuron protein 1-like isoform X1.	Gem-associated protein 7-like.	0.911