(16 nodes) Intercalated disc network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000091770	Cadherin 2, type 1, N-cadherin. (916 aa)
	LOC107568336	Cadherin 2, type 1, N-cadherin. (908 aa)
	LOC107570993	Catenin beta-1 isoform X1. (791 aa)
	LOC107586091	LOW QUALITY PROTEIN: plakophilin-2-like. (809 aa)
	ENSSGRP00000067405	Catenin beta-1-like. (822 aa)
	Rangrf	Ran guanine nucleotide release factor. (186 aa)
	LOC107572539	LIM and senescent cell antigen-like-containing domain protein 1. (351 aa)
	ctnnb1	Catenin beta 1. (785 aa)
	ENSSGRP00000088671	LIM and senescent cell antigen-like-containing domain protein 1. (340 aa)
	ENSSGRP00000088665	annotation not available (60 aa)
	LOC107589947	Plakophilin-2-like isoform X1. (807 aa)
	LOC107571545	Cadherin 2, type 1, N-cadherin. (966 aa)
	LOC107592060	Catenin beta-1-like. (785 aa)
	ENSSGRP00000097256	annotation not available (174 aa)
	LOC107551808	LIM and senescent cell antigen-like-containing domain protein 1 isoform X1. (363 aa)
	ENSSGRP00000094572	Connexin 43. (282 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000067405	ENSSGRP00000091770	ENSSGRP00000067405	ENSSGRP00000091770	Catenin beta-1-like.	Cadherin 2, type 1, N-cadherin.	0.887
ENSSGRP00000067405	ENSSGRP00000094572	ENSSGRP00000067405	ENSSGRP00000094572	Catenin beta-1-like.	Connexin 43.	0.557
ENSSGRP00000067405	ENSSGRP00000097256	ENSSGRP00000067405	ENSSGRP00000097256	Catenin beta-1-like.	annotation not available	0.557
ENSSGRP00000067405	LOC107568336	ENSSGRP00000067405	ENSSGRP00000090482	Catenin beta-1-like.	Cadherin 2, type 1, N-cadherin.	0.798
ENSSGRP00000067405	LOC107570993	ENSSGRP00000067405	ENSSGRP00000047498	Catenin beta-1-like.	Catenin beta-1 isoform X1.	0.900
ENSSGRP00000067405	LOC107571545	ENSSGRP00000067405	ENSSGRP00000063202	Catenin beta-1-like.	Cadherin 2, type 1, N-cadherin.	0.887
ENSSGRP00000067405	LOC107586091	ENSSGRP00000067405	ENSSGRP00000042858	Catenin beta-1-like.	LOW QUALITY PROTEIN: plakophilin-2-like.	0.534
ENSSGRP00000067405	LOC107589947	ENSSGRP00000067405	ENSSGRP00000064213	Catenin beta-1-like.	Plakophilin-2-like isoform X1.	0.534
ENSSGRP00000067405	LOC107592060	ENSSGRP00000067405	ENSSGRP00000099877	Catenin beta-1-like.	Catenin beta-1-like.	0.908
ENSSGRP00000067405	ctnnb1	ENSSGRP00000067405	ENSSGRP00000010620	Catenin beta-1-like.	Catenin beta 1.	0.908
ENSSGRP00000091770	ENSSGRP00000067405	ENSSGRP00000091770	ENSSGRP00000067405	Cadherin 2, type 1, N-cadherin.	Catenin beta-1-like.	0.887
ENSSGRP00000091770	ENSSGRP00000094572	ENSSGRP00000091770	ENSSGRP00000094572	Cadherin 2, type 1, N-cadherin.	Connexin 43.	0.714
ENSSGRP00000091770	ENSSGRP00000097256	ENSSGRP00000091770	ENSSGRP00000097256	Cadherin 2, type 1, N-cadherin.	annotation not available	0.738
ENSSGRP00000091770	LOC107568336	ENSSGRP00000091770	ENSSGRP00000090482	Cadherin 2, type 1, N-cadherin.	Cadherin 2, type 1, N-cadherin.	0.901
ENSSGRP00000091770	LOC107570993	ENSSGRP00000091770	ENSSGRP00000047498	Cadherin 2, type 1, N-cadherin.	Catenin beta-1 isoform X1.	0.887
ENSSGRP00000091770	LOC107571545	ENSSGRP00000091770	ENSSGRP00000063202	Cadherin 2, type 1, N-cadherin.	Cadherin 2, type 1, N-cadherin.	0.900
ENSSGRP00000091770	LOC107586091	ENSSGRP00000091770	ENSSGRP00000042858	Cadherin 2, type 1, N-cadherin.	LOW QUALITY PROTEIN: plakophilin-2-like.	0.547
ENSSGRP00000091770	LOC107589947	ENSSGRP00000091770	ENSSGRP00000064213	Cadherin 2, type 1, N-cadherin.	Plakophilin-2-like isoform X1.	0.547
ENSSGRP00000091770	LOC107592060	ENSSGRP00000091770	ENSSGRP00000099877	Cadherin 2, type 1, N-cadherin.	Catenin beta-1-like.	0.798
ENSSGRP00000091770	ctnnb1	ENSSGRP00000091770	ENSSGRP00000010620	Cadherin 2, type 1, N-cadherin.	Catenin beta 1.	0.798