(119 nodes) Large ribosomal subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107556383	Large subunit ribosomal protein L30e. (119 aa)
	LOC107588072	39S ribosomal protein L54, mitochondrial-like. (136 aa)
	ENSSGRP00000074631	annotation not available (146 aa)
	mrpl19	39S ribosomal protein L19, mitochondrial. (284 aa)
	LOC107559052	39S ribosomal protein L51, mitochondrial-like. (119 aa)
	ENSSGRP00000073389	39S ribosomal protein L46, mitochondrial-like. (236 aa)
	LOC107550616	Mpv17-like protein 2. (196 aa)
	ENSSGRP00000072027	annotation not available (134 aa)
	LOC107561043	39S ribosomal protein L11, mitochondrial-like. (193 aa)
	LOC107565436-2	Large subunit ribosomal protein L44e. (106 aa)
	ENSSGRP00000069721	28S ribosomal protein S30, mitochondrial-like. (324 aa)
	ENSSGRP00000069281	39S ribosomal protein L23, mitochondrial-like. (162 aa)
	mrpl15	39S ribosomal protein L15, mitochondrial. (300 aa)
	LOC107567432	Large subunit ribosomal protein L19e. (194 aa)
	LOC107585395	60S ribosomal protein L35-like. (126 aa)
	mrpl58	Peptidyl-tRNA hydrolase ICT1, mitochondrial. (200 aa)
	Mrpl45	39S ribosomal protein L45, mitochondrial. (328 aa)
	LOC107549148	39S ribosomal protein L14, mitochondrial isoform X1. (141 aa)
	ENSSGRP00000057380	annotation not available (85 aa)
	ENSSGRP00000053075	annotation not available (202 aa)
	ENSSGRP00000051201	Ribosomal protein L15. (197 aa)
	LOC107555578	39S ribosomal protein L53, mitochondrial-like isoform X1. (108 aa)
	LOC107583768	Large subunit ribosomal protein L4e. (381 aa)
	LOC107578260	39S ribosomal protein L48, mitochondrial-like. (209 aa)
	ENSSGRP00000047297	Ribosomal protein L10. (210 aa)
	LOC107599924	39S ribosomal protein L41, mitochondrial. (135 aa)
	rpl29	Large subunit ribosomal protein L29e. (64 aa)
	LOC107565786	39S ribosomal protein L43, mitochondrial-like. (148 aa)
	LOC107586898	39S ribosomal protein L35, mitochondrial-like isoform X1. (175 aa)
	LOC107553857	39S ribosomal protein L23, mitochondrial. (153 aa)
	ENSSGRP00000042403	Mitochondrial ribosomal protein L36. (118 aa)
	LOC107565436	60S ribosomal protein L36a. (127 aa)
	ENSSGRP00000041674	Mitochondrial ribosomal protein L18. (180 aa)
	LOC107570282	Large subunit ribosomal protein L10e. (261 aa)
	Rpl9	Large subunit ribosomal protein L9e. (183 aa)
	mrpl18	39S ribosomal protein L18, mitochondrial isoform X1. (211 aa)
	ENSSGRP00000039066	Mitochondrial ribosomal protein L48. (108 aa)
	ENSSGRP00000038824	39S ribosomal protein L54, mitochondrial-like. (169 aa)
	ENSSGRP00000036510	Large subunit ribosomal protein L19e. (194 aa)
	ENSSGRP00000035198	annotation not available (62 aa)
	LOC107581592	39S ribosomal protein L43, mitochondrial-like. (152 aa)
	Mrpl2	39S ribosomal protein L2, mitochondrial isoform X1. (285 aa)
	LOC107584350	39S ribosomal protein L53, mitochondrial-like. (107 aa)
	mrps30	28S ribosomal protein S30, mitochondrial. (416 aa)
	ENSSGRP00000002048	39S ribosomal protein L38, mitochondrial-like. (264 aa)
	MRPL49	39S ribosomal protein L49, mitochondrial. (176 aa)
	MRPL32	39S ribosomal protein L32, mitochondrial-like. (148 aa)
	ENSSGRP00000005414	annotation not available (135 aa)
	LOC107580894	39S ribosomal protein L49, mitochondrial-like. (94 aa)
	ENSSGRP00000006068	39S ribosomal protein L55, mitochondrial-like. (115 aa)
	LOC107580210	Probable 39S ribosomal protein L24, mitochondrial. (214 aa)
	ENSSGRP00000006291	annotation not available (89 aa)
	RPL26	Large subunit ribosomal protein L26e. (119 aa)
	ENSSGRP00000007328	39S ribosomal protein L28, mitochondrial-like. (189 aa)
	ENSSGRP00000007904	39S ribosomal protein L13, mitochondrial-like. (167 aa)
	ENSSGRP00000009619	39S ribosomal protein L55, mitochondrial-like. (122 aa)
	ENSSGRP00000010884	annotation not available (170 aa)
	ENSSGRP00000011939	Mitochondrial ribosomal protein L24. (291 aa)
	ENSSGRP00000012429	annotation not available (208 aa)
	LOC107584597	Large subunit ribosomal protein L35e. (123 aa)
	ENSSGRP00000012933	Mitochondrial ribosomal protein L19. (267 aa)
	ENSSGRP00000016671	39S ribosomal protein L4, mitochondrial. (297 aa)
	ENSSGRP00000017924	annotation not available (54 aa)
	ENSSGRP00000019557	39S ribosomal protein L51, mitochondrial-like. (135 aa)
	ENSSGRP00000024059	annotation not available (179 aa)
	LOC107599340	39S ribosomal protein L12, mitochondrial-like. (195 aa)
	MRPL13	Mitochondrial ribosomal protein L13. (210 aa)
	ENSSGRP00000025740	Mitochondrial ribosomal protein L28. (238 aa)
	LOC107591626	Nucleolar protein of 40 kDa-like. (236 aa)
	Mrpl36	39S ribosomal protein L36, mitochondrial. (119 aa)
	Mrpl21	39S ribosomal protein L21, mitochondrial. (174 aa)
	mrpl33	39S ribosomal protein L33, mitochondrial. (103 aa)
	Mrpl42	39S ribosomal protein L42, mitochondrial. (137 aa)
	mrpl37	39S ribosomal protein L37, mitochondrial. (434 aa)
	RPLP1	Large subunit ribosomal protein LP1. (93 aa)
	LOC107596972	60S ribosomal protein L4-B-like isoform X1. (380 aa)
	rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	ENSSGRP00000106784	annotation not available (187 aa)
	ENSSGRP00000106246	Mitochondrial ribosomal protein L32. (113 aa)
	ENSSGRP00000104688	annotation not available (64 aa)
	ENSSGRP00000102175	39S ribosomal protein L40, mitochondrial-like isoform X1. (259 aa)
	ENSSGRP00000102115	Mitochondrial ribosomal protein L4. (278 aa)
	ENSSGRP00000101819	Mitochondrial ribosomal protein L45. (244 aa)
	LOC107559598	60S ribosomal protein L6-like isoform X1. (259 aa)
	mrpl3	39S ribosomal protein L3, mitochondrial isoform X1. (351 aa)
	ENSSGRP00000100478	Mitochondrial ribosomal protein L17. (208 aa)
	LOC107585198	Probable 54S ribosomal protein L34, mitochondrial. (124 aa)
	LOC107585061	Mpv17-like protein 2. (196 aa)
	LOC107568953-2	39S ribosomal protein L30, mitochondrial-like. (154 aa)
	LOC107568953	39S ribosomal protein L30, mitochondrial-like isoform X1. (158 aa)
	rpl32	Large subunit ribosomal protein L32e. (135 aa)
	ENSSGRP00000095976	annotation not available (70 aa)
	LOC107592435	39S ribosomal protein L32, mitochondrial-like. (174 aa)
	mrpl52	39S ribosomal protein L52, mitochondrial. (126 aa)
	LOC107600070	Transcription termination factor 4, mitochondrial-like isoform X1. (317 aa)
	LOC107554268	39S ribosomal protein L28, mitochondrial-like isoform X1. (252 aa)
	ENSSGRP00000092407	LOW QUALITY PROTEIN: 39S ribosomal protein L28, mitochondrial-like. (142 aa)
	ENSSGRP00000091872	Mitochondrial ribosomal protein L10. (247 aa)
	ENSSGRP00000091149	annotation not available (280 aa)
	LOC107593562	Nucleolar protein of 40 kDa-like. (236 aa)
	ENSSGRP00000090239	Mitochondrial ribosomal protein L34. (131 aa)
	ENSSGRP00000090004	39S ribosomal protein L47, mitochondrial-like. (162 aa)
	ENSSGRP00000086676	Uncharacterized protein C15orf57 homolog. (136 aa)
	ENSSGRP00000084530	Large subunit ribosomal protein L30e. (112 aa)
	LOC107560058	39S ribosomal protein L40, mitochondrial-like. (195 aa)
	LOC107560057	Large subunit ribosomal protein L6e. (265 aa)
	LOC107592314	39S ribosomal protein L41, mitochondrial-like isoform X1. (135 aa)
	LOC107586084	39S ribosomal protein L14, mitochondrial-like. (141 aa)
	Mrpl27	39S ribosomal protein L27, mitochondrial. (148 aa)
	ENSSGRP00000031019	39S ribosomal protein L47, mitochondrial-like. (281 aa)
	LOC107595760	39S ribosomal protein L17, mitochondrial-like. (168 aa)
	rpl18a	60S ribosomal protein L18a isoform X1. (176 aa)
	LOC107600759	39S ribosomal protein L46, mitochondrial-like. (285 aa)
	mrpl22	39S ribosomal protein L22, mitochondrial. (209 aa)
	LOC107561689	39S ribosomal protein L35, mitochondrial-like. (171 aa)
	mrpl16	39S ribosomal protein L16, mitochondrial isoform X1. (255 aa)
	ENSSGRP00000079041	Mitochondrial ribosomal protein L39. (331 aa)
	LOC107587121	Large subunit ribosomal protein L26e. (145 aa)
	ENSSGRP00000075414	Ribosomal protein L32. (125 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002048	ENSSGRP00000006068	ENSSGRP00000002048	ENSSGRP00000006068	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L55, mitochondrial-like.	0.725
ENSSGRP00000002048	ENSSGRP00000007328	ENSSGRP00000002048	ENSSGRP00000007328	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L28, mitochondrial-like.	0.621
ENSSGRP00000002048	ENSSGRP00000007904	ENSSGRP00000002048	ENSSGRP00000007904	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L13, mitochondrial-like.	0.912
ENSSGRP00000002048	ENSSGRP00000009619	ENSSGRP00000002048	ENSSGRP00000009619	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L55, mitochondrial-like.	0.725
ENSSGRP00000002048	ENSSGRP00000010884	ENSSGRP00000002048	ENSSGRP00000010884	39S ribosomal protein L38, mitochondrial-like.	annotation not available	0.582
ENSSGRP00000002048	ENSSGRP00000011939	ENSSGRP00000002048	ENSSGRP00000011939	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L24.	0.743
ENSSGRP00000002048	ENSSGRP00000012429	ENSSGRP00000002048	ENSSGRP00000012429	39S ribosomal protein L38, mitochondrial-like.	annotation not available	0.805
ENSSGRP00000002048	ENSSGRP00000012933	ENSSGRP00000002048	ENSSGRP00000012933	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L19.	0.900
ENSSGRP00000002048	ENSSGRP00000016671	ENSSGRP00000002048	ENSSGRP00000016671	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L4, mitochondrial.	0.908
ENSSGRP00000002048	ENSSGRP00000019557	ENSSGRP00000002048	ENSSGRP00000019557	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L51, mitochondrial-like.	0.727
ENSSGRP00000002048	ENSSGRP00000024059	ENSSGRP00000002048	ENSSGRP00000024059	39S ribosomal protein L38, mitochondrial-like.	annotation not available	0.805
ENSSGRP00000002048	ENSSGRP00000025740	ENSSGRP00000002048	ENSSGRP00000025740	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L28.	0.621
ENSSGRP00000002048	ENSSGRP00000031019	ENSSGRP00000002048	ENSSGRP00000031019	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L47, mitochondrial-like.	0.859
ENSSGRP00000002048	ENSSGRP00000035198	ENSSGRP00000002048	ENSSGRP00000035198	39S ribosomal protein L38, mitochondrial-like.	annotation not available	0.577
ENSSGRP00000002048	ENSSGRP00000038824	ENSSGRP00000002048	ENSSGRP00000038824	39S ribosomal protein L38, mitochondrial-like.	39S ribosomal protein L54, mitochondrial-like.	0.784
ENSSGRP00000002048	ENSSGRP00000039066	ENSSGRP00000002048	ENSSGRP00000039066	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L48.	0.895
ENSSGRP00000002048	ENSSGRP00000041674	ENSSGRP00000002048	ENSSGRP00000041674	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L18.	0.891
ENSSGRP00000002048	ENSSGRP00000042403	ENSSGRP00000002048	ENSSGRP00000042403	39S ribosomal protein L38, mitochondrial-like.	Mitochondrial ribosomal protein L36.	0.867
ENSSGRP00000002048	ENSSGRP00000047297	ENSSGRP00000002048	ENSSGRP00000047297	39S ribosomal protein L38, mitochondrial-like.	Ribosomal protein L10.	0.667
ENSSGRP00000002048	ENSSGRP00000053075	ENSSGRP00000002048	ENSSGRP00000053075	39S ribosomal protein L38, mitochondrial-like.	annotation not available	0.577