(24 nodes) Catenin complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000097096	annotation not available (758 aa)
	ENSSGRP00000091770	Cadherin 2, type 1, N-cadherin. (916 aa)
	LOC107551739	Cadherin 5, type 2, VE-cadherin. (769 aa)
	LOC107584507	Cadherin 6, type 2, K-cadherin. (814 aa)
	LOC107586427	Cadherin 10, type 2, T2-cadherin. (787 aa)
	ENSSGRP00000067405	Catenin beta-1-like. (822 aa)
	LOC107571545	Cadherin 2, type 1, N-cadherin. (966 aa)
	ENSSGRP00000062907	Si:dkey-30c15.12. (813 aa)
	ENSSGRP00000054851	Cadherin 10, type 2, T2-cadherin. (227 aa)
	ENSSGRP00000054849	annotation not available (510 aa)
	LOC107570993	Catenin beta-1 isoform X1. (791 aa)
	ENSSGRP00000043732	Cadherin 1, type 1, E-cadherin. (686 aa)
	ENSSGRP00000037541	annotation not available (769 aa)
	LOC107567409	Cadherin 6, type 2, K-cadherin. (792 aa)
	LOC107561466	B-cadherin-like. (691 aa)
	ENSSGRP00000036068	Cadherin 1, type 1, E-cadherin. (866 aa)
	ENSSGRP00000032746	annotation not available (95 aa)
	ENSSGRP00000032745	Cadherin 10, type 2, T2-cadherin. (230 aa)
	LOC107564636	Cadherin 5, type 2, VE-cadherin. (770 aa)
	ENSSGRP00000012605	annotation not available (467 aa)
	ENSSGRP00000011218	Cadherin 1, type 1, E-cadherin. (764 aa)
	ctnnb1	Catenin beta 1. (785 aa)
	ENSSGRP00000103843	Catenin alpha-1. (906 aa)
	LOC107592060	Catenin beta-1-like. (785 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000011218	ENSSGRP00000036068	ENSSGRP00000011218	ENSSGRP00000036068	Cadherin 1, type 1, E-cadherin.	Cadherin 1, type 1, E-cadherin.	0.901
ENSSGRP00000011218	ENSSGRP00000043732	ENSSGRP00000011218	ENSSGRP00000043732	Cadherin 1, type 1, E-cadherin.	Cadherin 1, type 1, E-cadherin.	0.902
ENSSGRP00000011218	ENSSGRP00000067405	ENSSGRP00000011218	ENSSGRP00000067405	Cadherin 1, type 1, E-cadherin.	Catenin beta-1-like.	0.981
ENSSGRP00000011218	ENSSGRP00000091770	ENSSGRP00000011218	ENSSGRP00000091770	Cadherin 1, type 1, E-cadherin.	Cadherin 2, type 1, N-cadherin.	0.435
ENSSGRP00000011218	ENSSGRP00000097096	ENSSGRP00000011218	ENSSGRP00000097096	Cadherin 1, type 1, E-cadherin.	annotation not available	0.624
ENSSGRP00000011218	ENSSGRP00000103843	ENSSGRP00000011218	ENSSGRP00000103843	Cadherin 1, type 1, E-cadherin.	Catenin alpha-1.	0.624
ENSSGRP00000011218	LOC107551739	ENSSGRP00000011218	ENSSGRP00000087047	Cadherin 1, type 1, E-cadherin.	Cadherin 5, type 2, VE-cadherin.	0.612
ENSSGRP00000011218	LOC107564636	ENSSGRP00000011218	ENSSGRP00000024238	Cadherin 1, type 1, E-cadherin.	Cadherin 5, type 2, VE-cadherin.	0.632
ENSSGRP00000011218	LOC107570993	ENSSGRP00000011218	ENSSGRP00000047498	Cadherin 1, type 1, E-cadherin.	Catenin beta-1 isoform X1.	0.981
ENSSGRP00000011218	LOC107571545	ENSSGRP00000011218	ENSSGRP00000063202	Cadherin 1, type 1, E-cadherin.	Cadherin 2, type 1, N-cadherin.	0.435
ENSSGRP00000011218	LOC107592060	ENSSGRP00000011218	ENSSGRP00000099877	Cadherin 1, type 1, E-cadherin.	Catenin beta-1-like.	0.980
ENSSGRP00000011218	ctnnb1	ENSSGRP00000011218	ENSSGRP00000010620	Cadherin 1, type 1, E-cadherin.	Catenin beta 1.	0.980
ENSSGRP00000012605	ENSSGRP00000067405	ENSSGRP00000012605	ENSSGRP00000067405	annotation not available	Catenin beta-1-like.	0.852
ENSSGRP00000012605	ENSSGRP00000091770	ENSSGRP00000012605	ENSSGRP00000091770	annotation not available	Cadherin 2, type 1, N-cadherin.	0.478
ENSSGRP00000012605	ENSSGRP00000097096	ENSSGRP00000012605	ENSSGRP00000097096	annotation not available	annotation not available	0.624
ENSSGRP00000012605	ENSSGRP00000103843	ENSSGRP00000012605	ENSSGRP00000103843	annotation not available	Catenin alpha-1.	0.624
ENSSGRP00000012605	LOC107551739	ENSSGRP00000012605	ENSSGRP00000087047	annotation not available	Cadherin 5, type 2, VE-cadherin.	0.639
ENSSGRP00000012605	LOC107564636	ENSSGRP00000012605	ENSSGRP00000024238	annotation not available	Cadherin 5, type 2, VE-cadherin.	0.642
ENSSGRP00000012605	LOC107570993	ENSSGRP00000012605	ENSSGRP00000047498	annotation not available	Catenin beta-1 isoform X1.	0.852
ENSSGRP00000012605	LOC107571545	ENSSGRP00000012605	ENSSGRP00000063202	annotation not available	Cadherin 2, type 1, N-cadherin.	0.478