(15 nodes) RSC-type complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000079194	Bromodomain containing 7. (604 aa)
	ENSSGRP00000076303	Polybromo 1, like. (1641 aa)
	LOC107551488	Bromodomain-containing protein 7-like isoform X1. (633 aa)
	LOC107572403	Protein polybromo-1-like. (1513 aa)
	LOC107587401	Probable global transcription activator SNF2L2 isoform X1. (264 aa)
	ENSSGRP00000042593	Protein polybromo-1-like. (1240 aa)
	LOC107555971	Protein polybromo-1-like isoform X1. (1667 aa)
	ENSSGRP00000005340	annotation not available (260 aa)
	ENSSGRP00000110564	Ash1 (absent, small, or homeotic)-like (Drosophila). (2606 aa)
	ENSSGRP00000059316	Histone-lysine N-methyltransferase ASH1L-like isoform X1. (2475 aa)
	LOC107598247	Probable global transcription activator SNF2L2 isoform X1. (263 aa)
	LOC107555896	AT-rich interactive domain-containing protein 2-like isoform X1. (1605 aa)
	ENSSGRP00000006828	[histone H3]-lysine4 N-trimethyltransferase ASH1L. (67 aa)
	LOC107590507	AT-rich interactive domain-containing protein 2-like isoform X1. (1607 aa)
	LOC107596620	[histone H3]-lysine4 N-trimethyltransferase ASH1L. (1702 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005340	ENSSGRP00000079194	ENSSGRP00000005340	ENSSGRP00000079194	annotation not available	Bromodomain containing 7.	0.901
ENSSGRP00000005340	LOC107551488	ENSSGRP00000005340	ENSSGRP00000066805	annotation not available	Bromodomain-containing protein 7-like isoform X1.	0.901
ENSSGRP00000005340	LOC107555896	ENSSGRP00000005340	ENSSGRP00000006015	annotation not available	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000005340	LOC107587401	ENSSGRP00000005340	ENSSGRP00000028361	annotation not available	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000005340	LOC107590507	ENSSGRP00000005340	ENSSGRP00000111354	annotation not available	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000005340	LOC107598247	ENSSGRP00000005340	ENSSGRP00000093412	annotation not available	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000042593	ENSSGRP00000079194	ENSSGRP00000042593	ENSSGRP00000079194	Protein polybromo-1-like.	Bromodomain containing 7.	0.901
ENSSGRP00000042593	LOC107551488	ENSSGRP00000042593	ENSSGRP00000066805	Protein polybromo-1-like.	Bromodomain-containing protein 7-like isoform X1.	0.901
ENSSGRP00000042593	LOC107555896	ENSSGRP00000042593	ENSSGRP00000006015	Protein polybromo-1-like.	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000042593	LOC107587401	ENSSGRP00000042593	ENSSGRP00000028361	Protein polybromo-1-like.	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000042593	LOC107590507	ENSSGRP00000042593	ENSSGRP00000111354	Protein polybromo-1-like.	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000042593	LOC107598247	ENSSGRP00000042593	ENSSGRP00000093412	Protein polybromo-1-like.	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000076303	ENSSGRP00000079194	ENSSGRP00000076303	ENSSGRP00000079194	Polybromo 1, like.	Bromodomain containing 7.	0.901
ENSSGRP00000076303	LOC107551488	ENSSGRP00000076303	ENSSGRP00000066805	Polybromo 1, like.	Bromodomain-containing protein 7-like isoform X1.	0.901
ENSSGRP00000076303	LOC107555896	ENSSGRP00000076303	ENSSGRP00000006015	Polybromo 1, like.	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000076303	LOC107587401	ENSSGRP00000076303	ENSSGRP00000028361	Polybromo 1, like.	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000076303	LOC107590507	ENSSGRP00000076303	ENSSGRP00000111354	Polybromo 1, like.	AT-rich interactive domain-containing protein 2-like isoform X1.	0.957
ENSSGRP00000076303	LOC107598247	ENSSGRP00000076303	ENSSGRP00000093412	Polybromo 1, like.	Probable global transcription activator SNF2L2 isoform X1.	0.714
ENSSGRP00000079194	ENSSGRP00000005340	ENSSGRP00000079194	ENSSGRP00000005340	Bromodomain containing 7.	annotation not available	0.901
ENSSGRP00000079194	ENSSGRP00000042593	ENSSGRP00000079194	ENSSGRP00000042593	Bromodomain containing 7.	Protein polybromo-1-like.	0.901