(17 nodes) Cdc73/Paf1 complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000088000	WD repeat domain 61. (100 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	LOC107586694	Peroxisome biogenesis factor 2-like. (312 aa)
	LOC107593758	Parafibromin. (530 aa)
	ENSSGRP00000086581	annotation not available (61 aa)
	leo1	RNA polymerase-associated protein LEO1. (621 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (716 aa)
	LOC107560012	WD repeat-containing protein 61-like. (305 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	LOC107561545	Cyclin-dependent kinase 2-interacting protein-like isoform X1. (217 aa)
	LOC107590326	Peroxisome biogenesis factor 2-like. (306 aa)
	ENSSGRP00000041033	LEO1 homolog, Paf1/RNA polymerase II complex component. (554 aa)
	ENSSGRP00000032271	PAF1 homolog, Paf1/RNA polymerase II complex component. (461 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	ENSSGRP00000000939	PAF1 homolog, Paf1/RNA polymerase II complex component. (336 aa)
	ENSSGRP00000086583	Cyclin-dependent kinase 2 interacting protein. (204 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000939	ENSSGRP00000025310	ENSSGRP00000000939	ENSSGRP00000025310	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000000939	ENSSGRP00000041033	ENSSGRP00000000939	ENSSGRP00000041033	PAF1 homolog, Paf1/RNA polymerase II complex component.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSSGRP00000000939	ENSSGRP00000086581	ENSSGRP00000000939	ENSSGRP00000086581	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.970
ENSSGRP00000000939	ENSSGRP00000086583	ENSSGRP00000000939	ENSSGRP00000086583	PAF1 homolog, Paf1/RNA polymerase II complex component.	Cyclin-dependent kinase 2 interacting protein.	0.970
ENSSGRP00000000939	ENSSGRP00000088000	ENSSGRP00000000939	ENSSGRP00000088000	PAF1 homolog, Paf1/RNA polymerase II complex component.	WD repeat domain 61.	0.982
ENSSGRP00000000939	ENSSGRP00000096558	ENSSGRP00000000939	ENSSGRP00000096558	PAF1 homolog, Paf1/RNA polymerase II complex component.	Parafibromin-like.	0.996
ENSSGRP00000000939	LOC107553014	ENSSGRP00000000939	ENSSGRP00000055838	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000000939	LOC107560012	ENSSGRP00000000939	ENSSGRP00000067867	PAF1 homolog, Paf1/RNA polymerase II complex component.	WD repeat-containing protein 61-like.	0.982
ENSSGRP00000000939	LOC107561545	ENSSGRP00000000939	ENSSGRP00000053264	PAF1 homolog, Paf1/RNA polymerase II complex component.	Cyclin-dependent kinase 2-interacting protein-like isoform X1.	0.970
ENSSGRP00000000939	LOC107588567	ENSSGRP00000000939	ENSSGRP00000057106	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein RTF1 homolog.	0.993
ENSSGRP00000000939	LOC107593758	ENSSGRP00000000939	ENSSGRP00000107347	PAF1 homolog, Paf1/RNA polymerase II complex component.	Parafibromin.	0.996
ENSSGRP00000000939	leo1	ENSSGRP00000000939	ENSSGRP00000084474	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein LEO1.	0.999
ENSSGRP00000000939	rtf1	ENSSGRP00000000939	ENSSGRP00000072037	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.993
ENSSGRP00000025310	ENSSGRP00000000939	ENSSGRP00000025310	ENSSGRP00000000939	RNA polymerase-associated protein CTR9 homolog.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.996
ENSSGRP00000025310	ENSSGRP00000032271	ENSSGRP00000025310	ENSSGRP00000032271	RNA polymerase-associated protein CTR9 homolog.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.996
ENSSGRP00000025310	ENSSGRP00000041033	ENSSGRP00000025310	ENSSGRP00000041033	RNA polymerase-associated protein CTR9 homolog.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSSGRP00000025310	ENSSGRP00000088000	ENSSGRP00000025310	ENSSGRP00000088000	RNA polymerase-associated protein CTR9 homolog.	WD repeat domain 61.	0.989
ENSSGRP00000025310	ENSSGRP00000096558	ENSSGRP00000025310	ENSSGRP00000096558	RNA polymerase-associated protein CTR9 homolog.	Parafibromin-like.	0.996
ENSSGRP00000025310	LOC107560012	ENSSGRP00000025310	ENSSGRP00000067867	RNA polymerase-associated protein CTR9 homolog.	WD repeat-containing protein 61-like.	0.989
ENSSGRP00000025310	LOC107588567	ENSSGRP00000025310	ENSSGRP00000057106	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog.	0.994