(79 nodes) SCF ubiquitin ligase complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000095214	F-box/WD repeat-containing protein 11. (568 aa)
	ENSSGRP00000087424	F-box/LRR-repeat protein 21-like. (80 aa)
	ENSSGRP00000085681	F-box and leucine-rich repeat protein 14. (406 aa)
	LOC107572714	F-box and leucine-rich repeat protein 9. (645 aa)
	LOC107595486	F-box only protein 32-like isoform X1. (356 aa)
	LOC107567701	F-box/WD repeat-containing protein 5-like. (599 aa)
	Fbxo41	F-box only protein 41. (788 aa)
	LOC107595240	F-box only protein 31-like. (582 aa)
	ENSSGRP00000076147	F-box/LRR-repeat protein 3-like isoform X1. (423 aa)
	ENSSGRP00000076111	F-box and leucine-rich repeat protein 6. (291 aa)
	LOC107599997	F-box only protein 4-like. (368 aa)
	LOC107573139	F-box only protein 42-like. (626 aa)
	ENSSGRP00000065588	F-box and leucine-rich repeat protein 3. (311 aa)
	ENSSGRP00000065022	F-box only protein 42-like. (585 aa)
	ENSSGRP00000062703	F-box only protein 33-like. (288 aa)
	ENSSGRP00000022039	annotation not available (79 aa)
	ENSSGRP00000022395	Solute carrier family 4 (sodium bicarbonate cotransporter), member 7. (188 aa)
	LOC107551629	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2). (410 aa)
	ENSSGRP00000026782	Ubiquitin specific peptidase 47. (1412 aa)
	ENSSGRP00000028798	annotation not available (84 aa)
	LOC107597718	F-box only protein 9-like. (330 aa)
	ENSSGRP00000029730	F-box and leucine-rich repeat protein 7. (454 aa)
	LOC107593986	F-box only protein 25-like. (339 aa)
	LOC107566917	F-box/LRR-repeat protein 7-like isoform X1. (485 aa)
	ENSSGRP00000061823	F-box and leucine-rich repeat protein 5. (646 aa)
	ENSSGRP00000033992	Si:ch73-290k24.5. (735 aa)
	ENSSGRP00000036055	F-box/LRR-repeat protein 17-like. (597 aa)
	ENSSGRP00000037670	F-box/LRR-repeat protein 19-like isoform X1. (792 aa)
	ENSSGRP00000038290	Si:ch73-290k24.5. (539 aa)
	fbxl22	F-box and leucine-rich repeat protein 22. (227 aa)
	ENSSGRP00000038792	F-box and leucine-rich repeat protein 17. (310 aa)
	ENSSGRP00000039290	F-box and leucine-rich repeat protein 5. (630 aa)
	fbxl15	F-box and leucine-rich repeat protein 15. (311 aa)
	ENSSGRP00000041551	annotation not available (79 aa)
	fbxo25	F-box only protein 25 isoform X1. (364 aa)
	ENSSGRP00000046213	annotation not available (67 aa)
	ENSSGRP00000050083	F-box protein, helicase, 18. (861 aa)
	ENSSGRP00000050359	Cyclin F. (667 aa)
	ENSSGRP00000050688	F-box and leucine-rich repeat protein 14. (409 aa)
	ENSSGRP00000050715	F-box and leucine-rich repeat protein 14. (414 aa)
	ENSSGRP00000051209	F-box only protein 41-like. (692 aa)
	ENSSGRP00000053749	F-box and leucine-rich repeat protein 3. (431 aa)
	LOC107573067	F-box/LRR-repeat protein 19-like isoform X1. (792 aa)
	LOC107599584	Cyclin-dependent kinase regulatory subunit CKS1. (77 aa)
	ENSSGRP00000112694	annotation not available (89 aa)
	ENSSGRP00000111484	annotation not available (95 aa)
	LOC107589507	Cyclin-dependent kinase regulatory subunit CKS1. (77 aa)
	LOC107595987	F-box/WD repeat-containing protein 5-like. (609 aa)
	rbx1	E3 ubiquitin-protein ligase RBX1. (108 aa)
	LOC107585539	F-box and leucine-rich repeat protein 7. (489 aa)
	ENSSGRP00000106961	annotation not available (84 aa)
	LOC107587167	Nuclear-interacting partner of ALK-like. (492 aa)
	ENSSGRP00000105459	F-box/LRR-repeat protein 6-like isoform X1. (299 aa)
	LOC107588312	F-box/WD repeat-containing protein 11-like. (562 aa)
	Fbxo33	F-box only protein 33. (547 aa)
	ENSSGRP00000103312	F-box and leucine-rich repeat protein 7. (447 aa)
	ENSSGRP00000102995	annotation not available (142 aa)
	ENSSGRP00000102994	F-box/LRR-repeat protein 3-like. (330 aa)
	LOC107575055	F-box/LRR-repeat protein 3-like isoform X1. (644 aa)
	ENSSGRP00000099130	F-box only protein 4-like isoform X1. (368 aa)
	ENSSGRP00000099007	F-box and WD repeat domain containing 11a. (464 aa)
	LOC107593637	F-box only protein 32-like. (359 aa)
	LOC107548167	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2). (409 aa)
	ENSSGRP00000096851	F-box and leucine-rich repeat protein 14. (414 aa)
	ccnf	F-box protein 1 (cyclin F). (762 aa)
	fbxo31	F-box only protein 31. (527 aa)
	ENSSGRP00000092730	Ubiquitin carboxyl-terminal hydrolase 47-like. (1311 aa)
	ENSSGRP00000092521	F-box DNA helicase 1. (948 aa)
	ENSSGRP00000092012	Transmembrane protein 183-like. (233 aa)
	LOC107593315	Cyclin-dependent kinases regulatory subunit 1-like. (79 aa)
	ENSSGRP00000003877	annotation not available (88 aa)
	fbxo9	F-box only protein 9 isoform X1. (419 aa)
	ENSSGRP00000004748	annotation not available (65 aa)
	ENSSGRP00000004959	Zgc:86839. (63 aa)
	ENSSGRP00000005442	RING-box protein 1. (100 aa)
	LOC107578770	Transmembrane protein 183-like. (249 aa)
	ENSSGRP00000007508	annotation not available (54 aa)
	ENSSGRP00000015439	annotation not available (84 aa)
	LOC107584496	Nuclear-interacting partner of ALK-like. (492 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003877	ENSSGRP00000005442	ENSSGRP00000003877	ENSSGRP00000005442	annotation not available	RING-box protein 1.	0.567
ENSSGRP00000003877	rbx1	ENSSGRP00000003877	ENSSGRP00000109008	annotation not available	E3 ubiquitin-protein ligase RBX1.	0.567
ENSSGRP00000004748	ENSSGRP00000005442	ENSSGRP00000004748	ENSSGRP00000005442	annotation not available	RING-box protein 1.	0.570
ENSSGRP00000004748	ENSSGRP00000050359	ENSSGRP00000004748	ENSSGRP00000050359	annotation not available	Cyclin F.	0.801
ENSSGRP00000004748	LOC107548167	ENSSGRP00000004748	ENSSGRP00000097005	annotation not available	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2).	0.951
ENSSGRP00000004748	LOC107551629	ENSSGRP00000004748	ENSSGRP00000024642	annotation not available	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2).	0.951
ENSSGRP00000004748	ccnf	ENSSGRP00000004748	ENSSGRP00000091742	annotation not available	F-box protein 1 (cyclin F).	0.801
ENSSGRP00000004748	rbx1	ENSSGRP00000004748	ENSSGRP00000109008	annotation not available	E3 ubiquitin-protein ligase RBX1.	0.570
ENSSGRP00000004959	ENSSGRP00000005442	ENSSGRP00000004959	ENSSGRP00000005442	Zgc:86839.	RING-box protein 1.	0.570
ENSSGRP00000004959	ENSSGRP00000050359	ENSSGRP00000004959	ENSSGRP00000050359	Zgc:86839.	Cyclin F.	0.801
ENSSGRP00000004959	LOC107548167	ENSSGRP00000004959	ENSSGRP00000097005	Zgc:86839.	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2).	0.951
ENSSGRP00000004959	LOC107551629	ENSSGRP00000004959	ENSSGRP00000024642	Zgc:86839.	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2).	0.951
ENSSGRP00000004959	ccnf	ENSSGRP00000004959	ENSSGRP00000091742	Zgc:86839.	F-box protein 1 (cyclin F).	0.801
ENSSGRP00000004959	rbx1	ENSSGRP00000004959	ENSSGRP00000109008	Zgc:86839.	E3 ubiquitin-protein ligase RBX1.	0.570
ENSSGRP00000005442	ENSSGRP00000003877	ENSSGRP00000005442	ENSSGRP00000003877	RING-box protein 1.	annotation not available	0.567
ENSSGRP00000005442	ENSSGRP00000004748	ENSSGRP00000005442	ENSSGRP00000004748	RING-box protein 1.	annotation not available	0.570
ENSSGRP00000005442	ENSSGRP00000004959	ENSSGRP00000005442	ENSSGRP00000004959	RING-box protein 1.	Zgc:86839.	0.570
ENSSGRP00000005442	ENSSGRP00000007508	ENSSGRP00000005442	ENSSGRP00000007508	RING-box protein 1.	annotation not available	0.567
ENSSGRP00000005442	ENSSGRP00000015439	ENSSGRP00000005442	ENSSGRP00000015439	RING-box protein 1.	annotation not available	0.567
ENSSGRP00000005442	ENSSGRP00000022039	ENSSGRP00000005442	ENSSGRP00000022039	RING-box protein 1.	annotation not available	0.567