(10 nodes) B cell receptor complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107556518	T-cell surface glycoprotein CD5-like. (266 aa)
	ENSSGRP00000058164	Uncharacterized protein LOC107549481 isoform X1. (101 aa)
	ENSSGRP00000064872	Protein sidekick-like. (227 aa)
	ENSSGRP00000075804	Uncharacterized protein LOC107594445. (318 aa)
	ENSSGRP00000081371	annotation not available (148 aa)
	ENSSGRP00000086029	annotation not available (102 aa)
	Cd79b	B-cell antigen receptor complex-associated protein beta chain. (162 aa)
	cd79a	B-cell antigen receptor complex-associated protein alpha chain. (252 aa)
	LOC107598400	Single-stranded DNA cytosine deaminase-like. (210 aa)
	LOC107549448	Single-stranded DNA cytosine deaminase-like. (210 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cd79b	ENSSGRP00000081371	ENSSGRP00000090395	ENSSGRP00000081371	B-cell antigen receptor complex-associated protein beta chain.	annotation not available	0.997
Cd79b	LOC107556518	ENSSGRP00000090395	ENSSGRP00000014133	B-cell antigen receptor complex-associated protein beta chain.	T-cell surface glycoprotein CD5-like.	0.657
Cd79b	cd79a	ENSSGRP00000090395	ENSSGRP00000100516	B-cell antigen receptor complex-associated protein beta chain.	B-cell antigen receptor complex-associated protein alpha chain.	0.997
ENSSGRP00000064872	ENSSGRP00000081371	ENSSGRP00000064872	ENSSGRP00000081371	Protein sidekick-like.	annotation not available	0.997
ENSSGRP00000064872	LOC107556518	ENSSGRP00000064872	ENSSGRP00000014133	Protein sidekick-like.	T-cell surface glycoprotein CD5-like.	0.657
ENSSGRP00000064872	cd79a	ENSSGRP00000064872	ENSSGRP00000100516	Protein sidekick-like.	B-cell antigen receptor complex-associated protein alpha chain.	0.997
ENSSGRP00000081371	Cd79b	ENSSGRP00000081371	ENSSGRP00000090395	annotation not available	B-cell antigen receptor complex-associated protein beta chain.	0.997
ENSSGRP00000081371	ENSSGRP00000064872	ENSSGRP00000081371	ENSSGRP00000064872	annotation not available	Protein sidekick-like.	0.997
ENSSGRP00000081371	LOC107556518	ENSSGRP00000081371	ENSSGRP00000014133	annotation not available	T-cell surface glycoprotein CD5-like.	0.656
LOC107549448	LOC107598400	ENSSGRP00000026863	ENSSGRP00000045631	Single-stranded DNA cytosine deaminase-like.	Single-stranded DNA cytosine deaminase-like.	0.900
LOC107556518	Cd79b	ENSSGRP00000014133	ENSSGRP00000090395	T-cell surface glycoprotein CD5-like.	B-cell antigen receptor complex-associated protein beta chain.	0.657
LOC107556518	ENSSGRP00000064872	ENSSGRP00000014133	ENSSGRP00000064872	T-cell surface glycoprotein CD5-like.	Protein sidekick-like.	0.657
LOC107556518	ENSSGRP00000081371	ENSSGRP00000014133	ENSSGRP00000081371	T-cell surface glycoprotein CD5-like.	annotation not available	0.656
LOC107556518	cd79a	ENSSGRP00000014133	ENSSGRP00000100516	T-cell surface glycoprotein CD5-like.	B-cell antigen receptor complex-associated protein alpha chain.	0.656
LOC107598400	LOC107549448	ENSSGRP00000045631	ENSSGRP00000026863	Single-stranded DNA cytosine deaminase-like.	Single-stranded DNA cytosine deaminase-like.	0.900
cd79a	Cd79b	ENSSGRP00000100516	ENSSGRP00000090395	B-cell antigen receptor complex-associated protein alpha chain.	B-cell antigen receptor complex-associated protein beta chain.	0.997
cd79a	ENSSGRP00000064872	ENSSGRP00000100516	ENSSGRP00000064872	B-cell antigen receptor complex-associated protein alpha chain.	Protein sidekick-like.	0.997
cd79a	LOC107556518	ENSSGRP00000100516	ENSSGRP00000014133	B-cell antigen receptor complex-associated protein alpha chain.	T-cell surface glycoprotein CD5-like.	0.656