(28 nodes) Cytosolic large ribosomal subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107591626	Nucleolar protein of 40 kDa-like. (236 aa)
	ENSSGRP00000005414	annotation not available (135 aa)
	ENSSGRP00000036510	Large subunit ribosomal protein L19e. (194 aa)
	Rpl9	Large subunit ribosomal protein L9e. (183 aa)
	LOC107570282	Large subunit ribosomal protein L10e. (261 aa)
	rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	LOC107596972	60S ribosomal protein L4-B-like isoform X1. (380 aa)
	RPLP1	Large subunit ribosomal protein LP1. (93 aa)
	ENSSGRP00000035198	annotation not available (62 aa)
	rpl29	Large subunit ribosomal protein L29e. (64 aa)
	ENSSGRP00000047297	Ribosomal protein L10. (210 aa)
	LOC107583768	Large subunit ribosomal protein L4e. (381 aa)
	ENSSGRP00000051201	Ribosomal protein L15. (197 aa)
	ENSSGRP00000053075	annotation not available (202 aa)
	LOC107567432	Large subunit ribosomal protein L19e. (194 aa)
	ENSSGRP00000075414	Ribosomal protein L32. (125 aa)
	LOC107587121	Large subunit ribosomal protein L26e. (145 aa)
	rpl18a	60S ribosomal protein L18a isoform X1. (176 aa)
	LOC107560057	Large subunit ribosomal protein L6e. (265 aa)
	ENSSGRP00000084530	Large subunit ribosomal protein L30e. (112 aa)
	LOC107593562	Nucleolar protein of 40 kDa-like. (236 aa)
	ENSSGRP00000095976	annotation not available (70 aa)
	rpl32	Large subunit ribosomal protein L32e. (135 aa)
	ENSSGRP00000017924	annotation not available (54 aa)
	RPL26	Large subunit ribosomal protein L26e. (119 aa)
	ENSSGRP00000006291	annotation not available (89 aa)
	LOC107556383	Large subunit ribosomal protein L30e. (119 aa)
	LOC107559598	60S ribosomal protein L6-like isoform X1. (259 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005414	ENSSGRP00000006291	ENSSGRP00000005414	ENSSGRP00000006291	annotation not available	annotation not available	0.999
ENSSGRP00000005414	ENSSGRP00000017924	ENSSGRP00000005414	ENSSGRP00000017924	annotation not available	annotation not available	0.998
ENSSGRP00000005414	ENSSGRP00000035198	ENSSGRP00000005414	ENSSGRP00000035198	annotation not available	annotation not available	0.995
ENSSGRP00000005414	ENSSGRP00000036510	ENSSGRP00000005414	ENSSGRP00000036510	annotation not available	Large subunit ribosomal protein L19e.	0.999
ENSSGRP00000005414	ENSSGRP00000047297	ENSSGRP00000005414	ENSSGRP00000047297	annotation not available	Ribosomal protein L10.	0.999
ENSSGRP00000005414	ENSSGRP00000051201	ENSSGRP00000005414	ENSSGRP00000051201	annotation not available	Ribosomal protein L15.	0.999
ENSSGRP00000005414	ENSSGRP00000053075	ENSSGRP00000005414	ENSSGRP00000053075	annotation not available	annotation not available	0.995
ENSSGRP00000005414	ENSSGRP00000075414	ENSSGRP00000005414	ENSSGRP00000075414	annotation not available	Ribosomal protein L32.	0.999
ENSSGRP00000005414	ENSSGRP00000084530	ENSSGRP00000005414	ENSSGRP00000084530	annotation not available	Large subunit ribosomal protein L30e.	0.999
ENSSGRP00000005414	ENSSGRP00000095976	ENSSGRP00000005414	ENSSGRP00000095976	annotation not available	annotation not available	0.999
ENSSGRP00000005414	LOC107556383	ENSSGRP00000005414	ENSSGRP00000100538	annotation not available	Large subunit ribosomal protein L30e.	0.999
ENSSGRP00000005414	LOC107559598	ENSSGRP00000005414	ENSSGRP00000101791	annotation not available	60S ribosomal protein L6-like isoform X1.	0.999
ENSSGRP00000005414	LOC107560057	ENSSGRP00000005414	ENSSGRP00000084367	annotation not available	Large subunit ribosomal protein L6e.	0.999
ENSSGRP00000005414	LOC107567432	ENSSGRP00000005414	ENSSGRP00000065796	annotation not available	Large subunit ribosomal protein L19e.	0.999
ENSSGRP00000005414	LOC107570282	ENSSGRP00000005414	ENSSGRP00000041585	annotation not available	Large subunit ribosomal protein L10e.	0.999
ENSSGRP00000005414	LOC107583768	ENSSGRP00000005414	ENSSGRP00000049686	annotation not available	Large subunit ribosomal protein L4e.	0.999
ENSSGRP00000005414	LOC107587121	ENSSGRP00000005414	ENSSGRP00000076802	annotation not available	Large subunit ribosomal protein L26e.	0.999
ENSSGRP00000005414	LOC107596972	ENSSGRP00000005414	ENSSGRP00000108296	annotation not available	60S ribosomal protein L4-B-like isoform X1.	0.999
ENSSGRP00000005414	RPL26	ENSSGRP00000005414	ENSSGRP00000006420	annotation not available	Large subunit ribosomal protein L26e.	0.999
ENSSGRP00000005414	RPLP1	ENSSGRP00000005414	ENSSGRP00000108768	annotation not available	Large subunit ribosomal protein LP1.	0.998