(117 nodes) Cytosolic ribosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107585697	Large subunit ribosomal protein L28e. (148 aa)
	LOC107554198	Small subunit ribosomal protein S26e. (115 aa)
	LOC107550595-2	40S ribosomal protein S28. (69 aa)
	LOC107593562	Nucleolar protein of 40 kDa-like. (236 aa)
	rps11	Ribosomal protein S11. (170 aa)
	ENSSGRP00000084530	Large subunit ribosomal protein L30e. (112 aa)
	LOC107560057	Large subunit ribosomal protein L6e. (265 aa)
	LOC107560304-2	40S ribosomal protein S16. (146 aa)
	rpl18a	60S ribosomal protein L18a isoform X1. (176 aa)
	rps19	Small subunit ribosomal protein S19e. (156 aa)
	ENSSGRP00000079140	Paladin-like. (818 aa)
	LOC107551827	40S ribosomal protein S6. (252 aa)
	LOC107550595	Small subunit ribosomal protein S28e. (69 aa)
	LOC107559438	Small subunit ribosomal protein S17e. (135 aa)
	LOC107587121	Large subunit ribosomal protein L26e. (145 aa)
	LOC107596838	Small subunit ribosomal protein S26e. (115 aa)
	ENSSGRP00000075414	Ribosomal protein L32. (125 aa)
	LOC107555153	Small subunit ribosomal protein S30e. (133 aa)
	ENSSGRP00000073710	Small subunit ribosomal protein S17e. (186 aa)
	LOC107557469	Apolipoprotein D and lipocalin family protein. (185 aa)
	LOC107588630	Paladin-like. (864 aa)
	RPL34	60S ribosomal protein L34-like. (116 aa)
	rps24	Small subunit ribosomal protein S24e. (152 aa)
	LOC107590347	Apolipoprotein D and lipocalin family protein. (207 aa)
	LOC107565436-2	Large subunit ribosomal protein L44e. (106 aa)
	RPS20	Small subunit ribosomal protein S20e. (120 aa)
	LOC107567432	Large subunit ribosomal protein L19e. (194 aa)
	LOC107585395	60S ribosomal protein L35-like. (126 aa)
	LOC107563646	Small subunit ribosomal protein S26e. (115 aa)
	LOC107555664	40S ribosomal protein S2 isoform X1. (279 aa)
	LOC107593403	Small subunit ribosomal protein S13e. (151 aa)
	ENSSGRP00000059789	annotation not available (122 aa)
	LOC107583605	Small subunit ribosomal protein S2e. (279 aa)
	LOC107549111	Small subunit ribosomal protein S7e. (217 aa)
	rps3a	Small subunit ribosomal protein S3Ae. (148 aa)
	ENSSGRP00000053075	annotation not available (202 aa)
	ENSSGRP00000052539	Ribosomal protein L13. (144 aa)
	rpl13	Large subunit ribosomal protein L13e. (211 aa)
	ENSSGRP00000052061	DEAH (Asp-Glu-Ala-His) box polypeptide 29. (1040 aa)
	LOC107565279	Small subunit ribosomal protein S25e. (124 aa)
	ENSSGRP00000051201	Ribosomal protein L15. (197 aa)
	LOC107561487	Malignant T-cell-amplified sequence 1-like. (181 aa)
	ENSSGRP00000050425	annotation not available (108 aa)
	LOC107583381	Small subunit ribosomal protein S25e. (124 aa)
	LOC107583768	Large subunit ribosomal protein L4e. (381 aa)
	LOC107603014	Small subunit ribosomal protein S6e. (249 aa)
	ENSSGRP00000047297	Ribosomal protein L10. (210 aa)
	LOC107591224	Large subunit ribosomal protein L21e. (160 aa)
	rpl29	Large subunit ribosomal protein L29e. (64 aa)
	LOC107565436	60S ribosomal protein L36a. (127 aa)
	LOC107570282	Large subunit ribosomal protein L10e. (261 aa)
	Rpl9	Large subunit ribosomal protein L9e. (183 aa)
	LOC107586033	Small subunit ribosomal protein S13e. (151 aa)
	LOC107567395	Small subunit ribosomal protein S30e. (133 aa)
	ENSSGRP00000036510	Large subunit ribosomal protein L19e. (194 aa)
	ENSSGRP00000035198	annotation not available (62 aa)
	ENSSGRP00000029801	annotation not available (145 aa)
	ENSSGRP00000029617	Large subunit ribosomal protein L36e. (111 aa)
	LOC107566275	Large subunit ribosomal protein L34e. (117 aa)
	LOC107560304	Small subunit ribosomal protein S16e. (146 aa)
	LOC107591626	Nucleolar protein of 40 kDa-like. (236 aa)
	ENSSGRP00000025080	annotation not available (99 aa)
	ENSSGRP00000025079	Small subunit ribosomal protein S3Ae. (104 aa)
	LOC107557416	40S ribosomal protein S23. (182 aa)
	RPL24	Large subunit ribosomal protein L24e. (158 aa)
	rps15	Small subunit ribosomal protein S15e. (148 aa)
	ENSSGRP00000019849	Ribosomal protein SA. (254 aa)
	ENSSGRP00000018931	annotation not available (130 aa)
	ENSSGRP00000018842	annotation not available (118 aa)
	ENSSGRP00000018465	annotation not available (82 aa)
	ENSSGRP00000017924	annotation not available (54 aa)
	rpl27a	Large subunit ribosomal protein L27Ae. (191 aa)
	ENSSGRP00000016306	Ribosomal protein S17. (124 aa)
	RPS19	Small subunit ribosomal protein S19e. (86 aa)
	LOC107551103	Large subunit ribosomal protein L24e. (158 aa)
	LOC107584718	Large subunit ribosomal protein L13e. (210 aa)
	RPL28	Large subunit ribosomal protein L28e. (155 aa)
	LOC107584597	Large subunit ribosomal protein L35e. (123 aa)
	RPS23	Ribosomal protein S23. (133 aa)
	ENSSGRP00000011182	annotation not available (59 aa)
	ENSSGRP00000010538	annotation not available (122 aa)
	LOC107585018	Large subunit ribosomal protein L21e. (160 aa)
	LOC107559191	Small subunit ribosomal protein S5e. (204 aa)
	ENSSGRP00000007523	annotation not available (46 aa)
	ENSSGRP00000007473	annotation not available (46 aa)
	ENSSGRP00000007466	Small subunit ribosomal protein SAe. (262 aa)
	LOC107585809	40S ribosomal protein S5. (220 aa)
	ENSSGRP00000006676	Small subunit ribosomal protein S19e. (69 aa)
	RPL26	Large subunit ribosomal protein L26e. (119 aa)
	ENSSGRP00000006291	annotation not available (89 aa)
	ENSSGRP00000006140	annotation not available (101 aa)
	ENSSGRP00000005414	annotation not available (135 aa)
	LOC107579695	40S ribosomal protein S20-like. (64 aa)
	LOC107577535	Large subunit ribosomal protein L36e. (108 aa)
	RPS15	Ribosomal protein S15. (133 aa)
	ENSSGRP00000003561	FAU ubiquitin like and ribosomal protein S30 fusion b. (153 aa)
	ENSSGRP00000003292	ATP-dependent RNA helicase DHX29-like. (1224 aa)
	rps29	Small subunit ribosomal protein S29e. (56 aa)
	FAU	Small subunit ribosomal protein S30e. (133 aa)
	ENSSGRP00000002289	Small subunit ribosomal protein S3Ae. (111 aa)
	LOC107586807	Apolipoprotein D and lipocalin family protein. (186 aa)
	ENSSGRP00000001959	annotation not available (167 aa)
	RPL7A	Large subunit ribosomal protein L7Ae. (266 aa)
	LOC107585018-2	60S ribosomal protein L21-like. (160 aa)
	ENSSGRP00000095976	annotation not available (70 aa)
	rpl32	Large subunit ribosomal protein L32e. (135 aa)
	ENSSGRP00000097726	Small subunit ribosomal protein SAe. (345 aa)
	ENSSGRP00000099532	Small subunit ribosomal protein S28e. (87 aa)
	LOC107556383	Large subunit ribosomal protein L30e. (119 aa)
	RPS11	Small subunit ribosomal protein S11e. (179 aa)
	LOC107559598	60S ribosomal protein L6-like isoform X1. (259 aa)
	ENSSGRP00000102498	Ribosomal protein L36. (102 aa)
	LOC107557416-2	Small subunit ribosomal protein S23e. (198 aa)
	rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	LOC107596972	60S ribosomal protein L4-B-like isoform X1. (380 aa)
	RPLP1	Large subunit ribosomal protein LP1. (93 aa)
	LOC107550743	Malignant T-cell-amplified sequence 1. (181 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002289	ENSSGRP00000003292	ENSSGRP00000002289	ENSSGRP00000003292	Small subunit ribosomal protein S3Ae.	ATP-dependent RNA helicase DHX29-like.	0.411
ENSSGRP00000002289	ENSSGRP00000003561	ENSSGRP00000002289	ENSSGRP00000003561	Small subunit ribosomal protein S3Ae.	FAU ubiquitin like and ribosomal protein S30 fusion b.	0.999
ENSSGRP00000002289	ENSSGRP00000005414	ENSSGRP00000002289	ENSSGRP00000005414	Small subunit ribosomal protein S3Ae.	annotation not available	0.978
ENSSGRP00000002289	ENSSGRP00000006140	ENSSGRP00000002289	ENSSGRP00000006140	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000006291	ENSSGRP00000002289	ENSSGRP00000006291	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000006676	ENSSGRP00000002289	ENSSGRP00000006676	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S19e.	0.987
ENSSGRP00000002289	ENSSGRP00000007466	ENSSGRP00000002289	ENSSGRP00000007466	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein SAe.	0.989
ENSSGRP00000002289	ENSSGRP00000007473	ENSSGRP00000002289	ENSSGRP00000007473	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000007523	ENSSGRP00000002289	ENSSGRP00000007523	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000010538	ENSSGRP00000002289	ENSSGRP00000010538	Small subunit ribosomal protein S3Ae.	annotation not available	0.993
ENSSGRP00000002289	ENSSGRP00000016306	ENSSGRP00000002289	ENSSGRP00000016306	Small subunit ribosomal protein S3Ae.	Ribosomal protein S17.	0.998
ENSSGRP00000002289	ENSSGRP00000017924	ENSSGRP00000002289	ENSSGRP00000017924	Small subunit ribosomal protein S3Ae.	annotation not available	0.983
ENSSGRP00000002289	ENSSGRP00000018465	ENSSGRP00000002289	ENSSGRP00000018465	Small subunit ribosomal protein S3Ae.	annotation not available	0.411
ENSSGRP00000002289	ENSSGRP00000018842	ENSSGRP00000002289	ENSSGRP00000018842	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000018931	ENSSGRP00000002289	ENSSGRP00000018931	Small subunit ribosomal protein S3Ae.	annotation not available	0.972
ENSSGRP00000002289	ENSSGRP00000019849	ENSSGRP00000002289	ENSSGRP00000019849	Small subunit ribosomal protein S3Ae.	Ribosomal protein SA.	0.989
ENSSGRP00000002289	ENSSGRP00000025079	ENSSGRP00000002289	ENSSGRP00000025079	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S3Ae.	0.918
ENSSGRP00000002289	ENSSGRP00000029617	ENSSGRP00000002289	ENSSGRP00000029617	Small subunit ribosomal protein S3Ae.	Large subunit ribosomal protein L36e.	0.968
ENSSGRP00000002289	ENSSGRP00000029801	ENSSGRP00000002289	ENSSGRP00000029801	Small subunit ribosomal protein S3Ae.	annotation not available	0.991
ENSSGRP00000002289	ENSSGRP00000035198	ENSSGRP00000002289	ENSSGRP00000035198	Small subunit ribosomal protein S3Ae.	annotation not available	0.966