(62 nodes) Cytosolic small ribosomal subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107550595	Small subunit ribosomal protein S28e. (69 aa)
	RPS20	Small subunit ribosomal protein S20e. (120 aa)
	LOC107563646	Small subunit ribosomal protein S26e. (115 aa)
	LOC107555664	40S ribosomal protein S2 isoform X1. (279 aa)
	LOC107593403	Small subunit ribosomal protein S13e. (151 aa)
	ENSSGRP00000059789	annotation not available (122 aa)
	LOC107583605	Small subunit ribosomal protein S2e. (279 aa)
	LOC107549111	Small subunit ribosomal protein S7e. (217 aa)
	rps3a	Small subunit ribosomal protein S3Ae. (148 aa)
	ENSSGRP00000052061	DEAH (Asp-Glu-Ala-His) box polypeptide 29. (1040 aa)
	LOC107603014	Small subunit ribosomal protein S6e. (249 aa)
	LOC107565279	Small subunit ribosomal protein S25e. (124 aa)
	LOC107561487	Malignant T-cell-amplified sequence 1-like. (181 aa)
	ENSSGRP00000050425	annotation not available (108 aa)
	LOC107550743	Malignant T-cell-amplified sequence 1. (181 aa)
	rps15	Small subunit ribosomal protein S15e. (148 aa)
	LOC107557416	40S ribosomal protein S23. (182 aa)
	LOC107583381	Small subunit ribosomal protein S25e. (124 aa)
	ENSSGRP00000025079	Small subunit ribosomal protein S3Ae. (104 aa)
	ENSSGRP00000025080	annotation not available (99 aa)
	LOC107560304	Small subunit ribosomal protein S16e. (146 aa)
	LOC107567395	Small subunit ribosomal protein S30e. (133 aa)
	LOC107586033	Small subunit ribosomal protein S13e. (151 aa)
	LOC107559438	Small subunit ribosomal protein S17e. (135 aa)
	LOC107596838	Small subunit ribosomal protein S26e. (115 aa)
	LOC107555153	Small subunit ribosomal protein S30e. (133 aa)
	ENSSGRP00000073710	Small subunit ribosomal protein S17e. (186 aa)
	LOC107588630	Paladin-like. (864 aa)
	rps24	Small subunit ribosomal protein S24e. (152 aa)
	LOC107557416-2	Small subunit ribosomal protein S23e. (198 aa)
	RPS11	Small subunit ribosomal protein S11e. (179 aa)
	ENSSGRP00000099532	Small subunit ribosomal protein S28e. (87 aa)
	ENSSGRP00000097726	Small subunit ribosomal protein SAe. (345 aa)
	LOC107554198	Small subunit ribosomal protein S26e. (115 aa)
	LOC107550595-2	40S ribosomal protein S28. (69 aa)
	rps11	Ribosomal protein S11. (170 aa)
	LOC107560304-2	40S ribosomal protein S16. (146 aa)
	rps19	Small subunit ribosomal protein S19e. (156 aa)
	ENSSGRP00000079140	Paladin-like. (818 aa)
	LOC107551827	40S ribosomal protein S6. (252 aa)
	ENSSGRP00000002289	Small subunit ribosomal protein S3Ae. (111 aa)
	FAU	Small subunit ribosomal protein S30e. (133 aa)
	rps29	Small subunit ribosomal protein S29e. (56 aa)
	ENSSGRP00000003292	ATP-dependent RNA helicase DHX29-like. (1224 aa)
	ENSSGRP00000003561	FAU ubiquitin like and ribosomal protein S30 fusion b. (153 aa)
	RPS15	Ribosomal protein S15. (133 aa)
	LOC107579695	40S ribosomal protein S20-like. (64 aa)
	ENSSGRP00000006676	Small subunit ribosomal protein S19e. (69 aa)
	LOC107585809	40S ribosomal protein S5. (220 aa)
	ENSSGRP00000007466	Small subunit ribosomal protein SAe. (262 aa)
	ENSSGRP00000007473	annotation not available (46 aa)
	ENSSGRP00000007523	annotation not available (46 aa)
	LOC107559191	Small subunit ribosomal protein S5e. (204 aa)
	ENSSGRP00000010538	annotation not available (122 aa)
	ENSSGRP00000011182	annotation not available (59 aa)
	RPS23	Ribosomal protein S23. (133 aa)
	RPS19	Small subunit ribosomal protein S19e. (86 aa)
	ENSSGRP00000016306	Ribosomal protein S17. (124 aa)
	ENSSGRP00000018465	annotation not available (82 aa)
	ENSSGRP00000018842	annotation not available (118 aa)
	ENSSGRP00000018931	annotation not available (130 aa)
	ENSSGRP00000019849	Ribosomal protein SA. (254 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002289	ENSSGRP00000003292	ENSSGRP00000002289	ENSSGRP00000003292	Small subunit ribosomal protein S3Ae.	ATP-dependent RNA helicase DHX29-like.	0.411
ENSSGRP00000002289	ENSSGRP00000003561	ENSSGRP00000002289	ENSSGRP00000003561	Small subunit ribosomal protein S3Ae.	FAU ubiquitin like and ribosomal protein S30 fusion b.	0.999
ENSSGRP00000002289	ENSSGRP00000006676	ENSSGRP00000002289	ENSSGRP00000006676	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S19e.	0.987
ENSSGRP00000002289	ENSSGRP00000007466	ENSSGRP00000002289	ENSSGRP00000007466	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein SAe.	0.989
ENSSGRP00000002289	ENSSGRP00000007473	ENSSGRP00000002289	ENSSGRP00000007473	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000007523	ENSSGRP00000002289	ENSSGRP00000007523	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000010538	ENSSGRP00000002289	ENSSGRP00000010538	Small subunit ribosomal protein S3Ae.	annotation not available	0.993
ENSSGRP00000002289	ENSSGRP00000016306	ENSSGRP00000002289	ENSSGRP00000016306	Small subunit ribosomal protein S3Ae.	Ribosomal protein S17.	0.998
ENSSGRP00000002289	ENSSGRP00000018465	ENSSGRP00000002289	ENSSGRP00000018465	Small subunit ribosomal protein S3Ae.	annotation not available	0.411
ENSSGRP00000002289	ENSSGRP00000018842	ENSSGRP00000002289	ENSSGRP00000018842	Small subunit ribosomal protein S3Ae.	annotation not available	0.980
ENSSGRP00000002289	ENSSGRP00000018931	ENSSGRP00000002289	ENSSGRP00000018931	Small subunit ribosomal protein S3Ae.	annotation not available	0.972
ENSSGRP00000002289	ENSSGRP00000019849	ENSSGRP00000002289	ENSSGRP00000019849	Small subunit ribosomal protein S3Ae.	Ribosomal protein SA.	0.989
ENSSGRP00000002289	ENSSGRP00000025079	ENSSGRP00000002289	ENSSGRP00000025079	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S3Ae.	0.918
ENSSGRP00000002289	ENSSGRP00000050425	ENSSGRP00000002289	ENSSGRP00000050425	Small subunit ribosomal protein S3Ae.	annotation not available	0.995
ENSSGRP00000002289	ENSSGRP00000052061	ENSSGRP00000002289	ENSSGRP00000052061	Small subunit ribosomal protein S3Ae.	DEAH (Asp-Glu-Ala-His) box polypeptide 29.	0.411
ENSSGRP00000002289	ENSSGRP00000059789	ENSSGRP00000002289	ENSSGRP00000059789	Small subunit ribosomal protein S3Ae.	annotation not available	0.988
ENSSGRP00000002289	ENSSGRP00000073710	ENSSGRP00000002289	ENSSGRP00000073710	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S17e.	0.972
ENSSGRP00000002289	ENSSGRP00000079140	ENSSGRP00000002289	ENSSGRP00000079140	Small subunit ribosomal protein S3Ae.	Paladin-like.	0.981
ENSSGRP00000002289	ENSSGRP00000097726	ENSSGRP00000002289	ENSSGRP00000097726	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein SAe.	0.989
ENSSGRP00000002289	ENSSGRP00000099532	ENSSGRP00000002289	ENSSGRP00000099532	Small subunit ribosomal protein S3Ae.	Small subunit ribosomal protein S28e.	0.987