(65 nodes) Desmosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107557698	Plakophilin-3-like. (734 aa)
	ENSSGRP00000109920	Si:ch73-74h11.1. (1010 aa)
	ENSSGRP00000109918	annotation not available (772 aa)
	ENSSGRP00000109917	Desmoglein-2-like. (713 aa)
	LOC107588868	Desmocollin-2-like. (912 aa)
	ENSSGRP00000108083	Kazrin-like. (517 aa)
	ENSSGRP00000108081	annotation not available (220 aa)
	LOC107586738	Kelch-like protein 24/35. (600 aa)
	ENSSGRP00000105239	Junction plakoglobin b. (711 aa)
	LOC107586617	Pinin-like. (671 aa)
	LOC107548190	Junctional adhesion molecule C-like. (312 aa)
	LOC107563614	Junction plakoglobin-like. (382 aa)
	ENSSGRP00000101529	Alpha-actinin-1-like. (922 aa)
	ENSSGRP00000097631	Desmoglein-2-like. (782 aa)
	LOC107589311	Plakophilin-3-like isoform X1. (871 aa)
	LOC107600063	Kelch-like protein 24/35. (599 aa)
	LOC107561060	Junctional adhesion molecule C-like isoform X1. (314 aa)
	LOC107557851	Kelch-like protein 24/35. (432 aa)
	LOC107552853	Actinin alpha 2/3. (935 aa)
	LOC107568314	Alpha-actinin-3-like isoform X1. (912 aa)
	ENSSGRP00000077260	Plakophilin-3-like. (728 aa)
	ENSSGRP00000076229	Alpha-actinin-2-like. (134 aa)
	ENSSGRP00000076226	Actinin, alpha 2b. (862 aa)
	ENSSGRP00000072117	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1. (304 aa)
	ENSSGRP00000072111	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like. (357 aa)
	LOC107590230	Kelch-like protein 24/35. (601 aa)
	LOC107558769	Kelch-like protein 6. (576 aa)
	LOC107553058	Plakophilin-3-like. (781 aa)
	ENSSGRP00000067284	annotation not available (97 aa)
	ENSSGRP00000067281	Alpha-actinin-2-like. (141 aa)
	ENSSGRP00000065072	Actinin alpha 3b. (888 aa)
	ENSSGRP00000062802	annotation not available (45 aa)
	GBGT1	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like. (315 aa)
	ENSSGRP00000062652	Histo-blood group ABO system transferase-like. (290 aa)
	ENSSGRP00000062648	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like. (323 aa)
	LOC107591321	Kelch-like protein 6. (614 aa)
	LOC107562072	Junction plakoglobin-like isoform X1. (741 aa)
	ENSSGRP00000060277	Alpha-actinin-4-like isoform X1. (806 aa)
	ENSSGRP00000057234	Si:ch211-256e16.3. (514 aa)
	ENSSGRP00000056923	Kazrin-A. (222 aa)
	ENSSGRP00000056919	Kazrin, periplakin interacting protein a. (459 aa)
	ENSSGRP00000051527	annotation not available (181 aa)
	ENSSGRP00000051526	Kazrin-like. (561 aa)
	ENSSGRP00000040035	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like. (323 aa)
	ENSSGRP00000039089	Neural-cadherin-like. (2702 aa)
	ENSSGRP00000035483	Neural-cadherin-like. (2282 aa)
	LOC107602958	Alpha-actinin-1 isoform X1. (907 aa)
	LOC107562513	Junction plakoglobin-like. (727 aa)
	LOC107570110	Alpha-actinin-4 isoform X1. (923 aa)
	LOC107597222	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1. (316 aa)
	ENSSGRP00000025448	Globoside alpha-N-acetylgalactosaminyltransferase. (319 aa)
	ENSSGRP00000022833	Alpha-actinin-3-like. (833 aa)
	ENSSGRP00000021779	Kelch-like protein 24/35. (563 aa)
	ENSSGRP00000015749	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like. (332 aa)
	ENSSGRP00000014874	Desmocollin-2-like. (817 aa)
	ENSSGRP00000014375	annotation not available (873 aa)
	LOC107559724	Desmoglein-3-like. (1156 aa)
	LOC107552129	Kelch-like protein 20. (621 aa)
	LOC107577945	Alpha-actinin-2-like. (805 aa)
	ENSSGRP00000010043	Neural-cadherin-like. (2706 aa)
	ENSSGRP00000009438	annotation not available (126 aa)
	ENSSGRP00000008785	B-cadherin-like. (882 aa)
	ENSSGRP00000006174	Kelch-like protein 24/35. (106 aa)
	ENSSGRP00000004599	annotation not available (129 aa)
	ENSSGRP00000001549	Kazrin, periplakin interacting protein a. (459 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000008785	ENSSGRP00000014874	ENSSGRP00000008785	ENSSGRP00000014874	B-cadherin-like.	Desmocollin-2-like.	0.760
ENSSGRP00000008785	ENSSGRP00000077260	ENSSGRP00000008785	ENSSGRP00000077260	B-cadherin-like.	Plakophilin-3-like.	0.617
ENSSGRP00000008785	ENSSGRP00000105239	ENSSGRP00000008785	ENSSGRP00000105239	B-cadherin-like.	Junction plakoglobin b.	0.677
ENSSGRP00000008785	LOC107553058	ENSSGRP00000008785	ENSSGRP00000068667	B-cadherin-like.	Plakophilin-3-like.	0.617
ENSSGRP00000008785	LOC107557698	ENSSGRP00000008785	ENSSGRP00000056068	B-cadherin-like.	Plakophilin-3-like.	0.617
ENSSGRP00000008785	LOC107562072	ENSSGRP00000008785	ENSSGRP00000061949	B-cadherin-like.	Junction plakoglobin-like isoform X1.	0.677
ENSSGRP00000008785	LOC107562513	ENSSGRP00000008785	ENSSGRP00000034335	B-cadherin-like.	Junction plakoglobin-like.	0.677
ENSSGRP00000008785	LOC107563614	ENSSGRP00000008785	ENSSGRP00000101853	B-cadherin-like.	Junction plakoglobin-like.	0.677
ENSSGRP00000008785	LOC107588868	ENSSGRP00000008785	ENSSGRP00000109916	B-cadherin-like.	Desmocollin-2-like.	0.760
ENSSGRP00000008785	LOC107589311	ENSSGRP00000008785	ENSSGRP00000095147	B-cadherin-like.	Plakophilin-3-like isoform X1.	0.617
ENSSGRP00000010043	ENSSGRP00000105239	ENSSGRP00000010043	ENSSGRP00000105239	Neural-cadherin-like.	Junction plakoglobin b.	0.585
ENSSGRP00000010043	LOC107562072	ENSSGRP00000010043	ENSSGRP00000061949	Neural-cadherin-like.	Junction plakoglobin-like isoform X1.	0.585
ENSSGRP00000010043	LOC107562513	ENSSGRP00000010043	ENSSGRP00000034335	Neural-cadherin-like.	Junction plakoglobin-like.	0.585
ENSSGRP00000010043	LOC107563614	ENSSGRP00000010043	ENSSGRP00000101853	Neural-cadherin-like.	Junction plakoglobin-like.	0.585
ENSSGRP00000014375	ENSSGRP00000014874	ENSSGRP00000014375	ENSSGRP00000014874	annotation not available	Desmocollin-2-like.	0.763
ENSSGRP00000014375	ENSSGRP00000077260	ENSSGRP00000014375	ENSSGRP00000077260	annotation not available	Plakophilin-3-like.	0.617
ENSSGRP00000014375	ENSSGRP00000105239	ENSSGRP00000014375	ENSSGRP00000105239	annotation not available	Junction plakoglobin b.	0.682
ENSSGRP00000014375	LOC107553058	ENSSGRP00000014375	ENSSGRP00000068667	annotation not available	Plakophilin-3-like.	0.617
ENSSGRP00000014375	LOC107557698	ENSSGRP00000014375	ENSSGRP00000056068	annotation not available	Plakophilin-3-like.	0.617
ENSSGRP00000014375	LOC107562072	ENSSGRP00000014375	ENSSGRP00000061949	annotation not available	Junction plakoglobin-like isoform X1.	0.824