(7 nodes) FACT complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107574555	FACT complex subunit SPT16-like. (816 aa)
	ENSSGRP00000103247	Structure specific recognition protein 1a. (586 aa)
	ENSSGRP00000075460	annotation not available (183 aa)
	ENSSGRP00000009522	annotation not available (64 aa)
	LOC107554702	Structure-specific recognition protein 1. (544 aa)
	ssrp1	Structure-specific recognition protein 1. (728 aa)
	ENSSGRP00000020706	annotation not available (45 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	annotation not available	annotation not available	0.970
ENSSGRP00000009522	LOC107574555	ENSSGRP00000009522	ENSSGRP00000021065	annotation not available	FACT complex subunit SPT16-like.	0.990
ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	annotation not available	annotation not available	0.970
ENSSGRP00000020706	ENSSGRP00000075460	ENSSGRP00000020706	ENSSGRP00000075460	annotation not available	annotation not available	0.970
ENSSGRP00000020706	ENSSGRP00000103247	ENSSGRP00000020706	ENSSGRP00000103247	annotation not available	Structure specific recognition protein 1a.	0.970
ENSSGRP00000020706	LOC107554702	ENSSGRP00000020706	ENSSGRP00000087235	annotation not available	Structure-specific recognition protein 1.	0.970
ENSSGRP00000020706	ssrp1	ENSSGRP00000020706	ENSSGRP00000074633	annotation not available	Structure-specific recognition protein 1.	0.970
ENSSGRP00000075460	ENSSGRP00000020706	ENSSGRP00000075460	ENSSGRP00000020706	annotation not available	annotation not available	0.970
ENSSGRP00000075460	LOC107574555	ENSSGRP00000075460	ENSSGRP00000021065	annotation not available	FACT complex subunit SPT16-like.	0.990
ENSSGRP00000103247	ENSSGRP00000020706	ENSSGRP00000103247	ENSSGRP00000020706	Structure specific recognition protein 1a.	annotation not available	0.970
ENSSGRP00000103247	LOC107574555	ENSSGRP00000103247	ENSSGRP00000021065	Structure specific recognition protein 1a.	FACT complex subunit SPT16-like.	0.990
LOC107554702	ENSSGRP00000020706	ENSSGRP00000087235	ENSSGRP00000020706	Structure-specific recognition protein 1.	annotation not available	0.970
LOC107554702	LOC107574555	ENSSGRP00000087235	ENSSGRP00000021065	Structure-specific recognition protein 1.	FACT complex subunit SPT16-like.	0.990
LOC107574555	ENSSGRP00000009522	ENSSGRP00000021065	ENSSGRP00000009522	FACT complex subunit SPT16-like.	annotation not available	0.990
LOC107574555	ENSSGRP00000075460	ENSSGRP00000021065	ENSSGRP00000075460	FACT complex subunit SPT16-like.	annotation not available	0.990
LOC107574555	ENSSGRP00000103247	ENSSGRP00000021065	ENSSGRP00000103247	FACT complex subunit SPT16-like.	Structure specific recognition protein 1a.	0.990
LOC107574555	LOC107554702	ENSSGRP00000021065	ENSSGRP00000087235	FACT complex subunit SPT16-like.	Structure-specific recognition protein 1.	0.990
LOC107574555	ssrp1	ENSSGRP00000021065	ENSSGRP00000074633	FACT complex subunit SPT16-like.	Structure-specific recognition protein 1.	0.990
ssrp1	ENSSGRP00000020706	ENSSGRP00000074633	ENSSGRP00000020706	Structure-specific recognition protein 1.	annotation not available	0.970
ssrp1	LOC107574555	ENSSGRP00000074633	ENSSGRP00000021065	Structure-specific recognition protein 1.	FACT complex subunit SPT16-like.	0.990