(35 nodes) PRC1 complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RING1	E3 ubiquitin-protein ligase RING2-A-like. (353 aa)
	ENSSGRP00000108786	Chromobox protein homolog 6-like. (467 aa)
	LOC107589914	E3 ubiquitin-protein ligase RING2-like. (234 aa)
	LOC107584093	Chromobox protein homolog 7-like isoform X1. (253 aa)
	LOC107568836	Laminin subunit beta-2-like isoform X1. (1832 aa)
	LOC107562304	E3 SUMO-protein ligase CBX4-like. (502 aa)
	LOC107585029	Chromobox protein homolog 6-like. (499 aa)
	LOC107561782	Microsomal glutathione S-transferase 3-like. (141 aa)
	LOC107588739	Polycomb group RING finger protein 6-like isoform X1. (317 aa)
	Cbx4	E3 SUMO-protein ligase CBX4 isoform X1. (539 aa)
	LOC107591932	Chromobox protein homolog 8-like. (360 aa)
	PCGF3	Polycomb group RING finger protein 3-like. (250 aa)
	LOC107554058	Chromobox protein homolog 7-like. (244 aa)
	LOC107602332	Chromobox protein homolog 8-like isoform X1. (412 aa)
	LOC107587786	Polyhomeotic-like protein 1. (889 aa)
	CBX6	Chromobox protein homolog 6-like. (453 aa)
	LOC107564705	E3 ubiquitin-protein ligase RING2 isoform X1. (360 aa)
	LOC107567817	E3 ubiquitin-protein ligase RING2-A-like. (352 aa)
	ENSSGRP00000008119	Polyhomeotic-like protein 3 isoform X1. (700 aa)
	ENSSGRP00000009092	Chromobox protein homolog 8-like isoform X1. (338 aa)
	LOC107562381	Polycomb group RING finger protein 3. (250 aa)
	LOC107571836	Chromobox protein homolog 2-like. (529 aa)
	LOC107552845	Polyhomeotic-like protein 1. (892 aa)
	LOC107597693	Microsomal glutathione S-transferase 3-like. (140 aa)
	ENSSGRP00000032089	Laminin subunit beta-1-like. (1806 aa)
	ENSSGRP00000066028	annotation not available (806 aa)
	LOC107602676	Chromobox protein homolog 6-like isoform X1. (468 aa)
	LOC107585366	Polycomb group RING finger protein 6-like isoform X1. (278 aa)
	ENSSGRP00000051582	Chromobox protein homolog 2-like. (516 aa)
	LOC107601979	Chromobox protein homolog 8-like. (360 aa)
	LOC107559248	Chromobox protein homolog 8-like. (338 aa)
	LOC107559247	E3 SUMO-protein ligase CBX4-like. (500 aa)
	LOC107553294	Chromobox protein homolog 8-like. (360 aa)
	LOC107553295	E3 SUMO-protein ligase CBX4-like. (542 aa)
	LOC107583303	Chromo domain-containing protein cec-1-like. (395 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX6	Cbx4	ENSSGRP00000002326	ENSSGRP00000080205	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4 isoform X1.	0.736
CBX6	ENSSGRP00000008119	ENSSGRP00000002326	ENSSGRP00000008119	Chromobox protein homolog 6-like.	Polyhomeotic-like protein 3 isoform X1.	0.666
CBX6	ENSSGRP00000051582	ENSSGRP00000002326	ENSSGRP00000051582	Chromobox protein homolog 6-like.	Chromobox protein homolog 2-like.	0.719
CBX6	ENSSGRP00000066028	ENSSGRP00000002326	ENSSGRP00000066028	Chromobox protein homolog 6-like.	annotation not available	0.666
CBX6	LOC107552845	ENSSGRP00000002326	ENSSGRP00000024039	Chromobox protein homolog 6-like.	Polyhomeotic-like protein 1.	0.652
CBX6	LOC107553295	ENSSGRP00000002326	ENSSGRP00000032174	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4-like.	0.736
CBX6	LOC107559247	ENSSGRP00000002326	ENSSGRP00000039036	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4-like.	0.736
CBX6	LOC107562304	ENSSGRP00000002326	ENSSGRP00000094564	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4-like.	0.736
CBX6	LOC107562381	ENSSGRP00000002326	ENSSGRP00000017342	Chromobox protein homolog 6-like.	Polycomb group RING finger protein 3.	0.601
CBX6	LOC107564705	ENSSGRP00000002326	ENSSGRP00000039017	Chromobox protein homolog 6-like.	E3 ubiquitin-protein ligase RING2 isoform X1.	0.837
CBX6	LOC107567817	ENSSGRP00000002326	ENSSGRP00000007264	Chromobox protein homolog 6-like.	E3 ubiquitin-protein ligase RING2-A-like.	0.837
CBX6	LOC107571836	ENSSGRP00000002326	ENSSGRP00000023050	Chromobox protein homolog 6-like.	Chromobox protein homolog 2-like.	0.719
CBX6	LOC107585366	ENSSGRP00000002326	ENSSGRP00000051640	Chromobox protein homolog 6-like.	Polycomb group RING finger protein 6-like isoform X1.	0.593
CBX6	LOC107587786	ENSSGRP00000002326	ENSSGRP00000000554	Chromobox protein homolog 6-like.	Polyhomeotic-like protein 1.	0.652
CBX6	LOC107588739	ENSSGRP00000002326	ENSSGRP00000085166	Chromobox protein homolog 6-like.	Polycomb group RING finger protein 6-like isoform X1.	0.593
CBX6	LOC107589914	ENSSGRP00000002326	ENSSGRP00000106825	Chromobox protein homolog 6-like.	E3 ubiquitin-protein ligase RING2-like.	0.837
CBX6	PCGF3	ENSSGRP00000002326	ENSSGRP00000078118	Chromobox protein homolog 6-like.	Polycomb group RING finger protein 3-like.	0.601
CBX6	RING1	ENSSGRP00000002326	ENSSGRP00000004888	Chromobox protein homolog 6-like.	E3 ubiquitin-protein ligase RING2-A-like.	0.837
Cbx4	CBX6	ENSSGRP00000080205	ENSSGRP00000002326	E3 SUMO-protein ligase CBX4 isoform X1.	Chromobox protein homolog 6-like.	0.736
Cbx4	ENSSGRP00000008119	ENSSGRP00000080205	ENSSGRP00000008119	E3 SUMO-protein ligase CBX4 isoform X1.	Polyhomeotic-like protein 3 isoform X1.	0.672